miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 3' -55 NC_004684.1 + 468 0.67 0.704988
Target:  5'- cGugGAcAACCggGCCaGCGAggucGGCAGCaCCg -3'
miRNA:   3'- -CugCUuUUGG--CGGaCGUU----CCGUCG-GG- -5'
19106 3' -55 NC_004684.1 + 505 0.66 0.757533
Target:  5'- aACGAcacgcuccugGAGCUG-CUGCAAGGCcuGGaCCCg -3'
miRNA:   3'- cUGCU----------UUUGGCgGACGUUCCG--UC-GGG- -5'
19106 3' -55 NC_004684.1 + 792 0.68 0.650671
Target:  5'- aAUGAugGCCcucaCCUGCAccucgccguGGCGGCCCg -3'
miRNA:   3'- cUGCUuuUGGc---GGACGUu--------CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 875 0.74 0.333201
Target:  5'- -cCGG--GCCGCgCUG-AAGGCGGCCCg -3'
miRNA:   3'- cuGCUuuUGGCG-GACgUUCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 897 0.68 0.650671
Target:  5'- cGCG-AGGCCGCC-GcCAAGGCcuAGCCg -3'
miRNA:   3'- cUGCuUUUGGCGGaC-GUUCCG--UCGGg -5'
19106 3' -55 NC_004684.1 + 1385 0.67 0.726297
Target:  5'- cGACGccAAGGCCGCCguUGCAcuGGCcagcgaccuggaGGCCUg -3'
miRNA:   3'- -CUGC--UUUUGGCGG--ACGUu-CCG------------UCGGG- -5'
19106 3' -55 NC_004684.1 + 1522 0.67 0.726297
Target:  5'- cGGCGucAACC-CCUcCGAGGUGGCCa -3'
miRNA:   3'- -CUGCuuUUGGcGGAcGUUCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 1550 0.66 0.767706
Target:  5'- aGCGGcccccacAACCGCCUGCugauGGUGcGCCUg -3'
miRNA:   3'- cUGCUu------UUGGCGGACGuu--CCGU-CGGG- -5'
19106 3' -55 NC_004684.1 + 1710 0.67 0.683396
Target:  5'- aGCGcaAGAAgCGCCUGCuGGcGCAGgCCu -3'
miRNA:   3'- cUGC--UUUUgGCGGACGuUC-CGUCgGG- -5'
19106 3' -55 NC_004684.1 + 2026 0.7 0.541912
Target:  5'- cGCGAuGACCGUC-GCccuGGUGGCCCu -3'
miRNA:   3'- cUGCUuUUGGCGGaCGuu-CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 2432 0.66 0.736818
Target:  5'- cGGCGAcaAGGCCgacaucGCCcGCcuGGGCGGCCa -3'
miRNA:   3'- -CUGCU--UUUGG------CGGaCGu-UCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 3524 0.66 0.736818
Target:  5'- cGACGGguGGGCCGaCCUggcggugcaagGCAAGGCAuUCCu -3'
miRNA:   3'- -CUGCU--UUUGGC-GGA-----------CGUUCCGUcGGG- -5'
19106 3' -55 NC_004684.1 + 3526 0.66 0.767706
Target:  5'- cGAUGAAGGCCGCCacgcgcGCAcguGGCA-CCg -3'
miRNA:   3'- -CUGCUUUUGGCGGa-----CGUu--CCGUcGGg -5'
19106 3' -55 NC_004684.1 + 3883 0.68 0.639715
Target:  5'- cGACGccAGGCCGCCcugcuggcGCAGGcGCAGCUg -3'
miRNA:   3'- -CUGCu-UUUGGCGGa-------CGUUC-CGUCGGg -5'
19106 3' -55 NC_004684.1 + 4029 0.68 0.650671
Target:  5'- cGCGucGGCCGCUcggUGCGcuGGGCGGUCa -3'
miRNA:   3'- cUGCuuUUGGCGG---ACGU--UCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 4332 0.68 0.66161
Target:  5'- cACGguAGCCGCCaccaaccGUuAGGCGGUCCc -3'
miRNA:   3'- cUGCuuUUGGCGGa------CGuUCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 4584 0.65 0.787626
Target:  5'- -cUGAAAGcucccCCGCCUGCccGGCAaCCCc -3'
miRNA:   3'- cuGCUUUU-----GGCGGACGuuCCGUcGGG- -5'
19106 3' -55 NC_004684.1 + 5568 0.99 0.006417
Target:  5'- gGACGAAAACCGCCUGCAAGGCGaCCCg -3'
miRNA:   3'- -CUGCUUUUGGCGGACGUUCCGUcGGG- -5'
19106 3' -55 NC_004684.1 + 5849 0.69 0.606845
Target:  5'- -uCGAGGACCagGCgUGCGAcuGGCAGgCCg -3'
miRNA:   3'- cuGCUUUUGG--CGgACGUU--CCGUCgGG- -5'
19106 3' -55 NC_004684.1 + 5920 0.66 0.757533
Target:  5'- cACGAccggcuGGCCGCgCUGgcCAccGGGCGGUCCa -3'
miRNA:   3'- cUGCUu-----UUGGCG-GAC--GU--UCCGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.