miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 3' -57.9 NC_004684.1 + 3656 1.11 0.000753
Target:  5'- gCCCGGUGCCGGGUCAUCGUACGGUGGc -3'
miRNA:   3'- -GGGCCACGGCCCAGUAGCAUGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 43765 0.76 0.209069
Target:  5'- aCCGGcguggucagGCCGGGUaCGUCGUgcuuggcguucuuACGGUGGu -3'
miRNA:   3'- gGGCCa--------CGGCCCA-GUAGCA-------------UGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 58318 0.73 0.294989
Target:  5'- aCCGGcgacGCCGGGUCAUgGcgcgccCGGUGGc -3'
miRNA:   3'- gGGCCa---CGGCCCAGUAgCau----GCCACC- -5'
19110 3' -57.9 NC_004684.1 + 1922 0.73 0.316488
Target:  5'- aCCCGGccUGCCGGGcCugguaccggCGcACGGUGGc -3'
miRNA:   3'- -GGGCC--ACGGCCCaGua-------GCaUGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 15518 0.72 0.36622
Target:  5'- gCCCGGgGCCGGGcgcuggaggcgcugaUCcgCGU-UGGUGGa -3'
miRNA:   3'- -GGGCCaCGGCCC---------------AGuaGCAuGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 24158 0.72 0.37115
Target:  5'- cUCCGGUGCaGGGUCcgCagGCGGUGc -3'
miRNA:   3'- -GGGCCACGgCCCAGuaGcaUGCCACc -5'
19110 3' -57.9 NC_004684.1 + 50681 0.72 0.379467
Target:  5'- gCCCGGUGCCgugcaaucGGGUaccgcgcaGUGCGGUGcGg -3'
miRNA:   3'- -GGGCCACGG--------CCCAguag----CAUGCCAC-C- -5'
19110 3' -57.9 NC_004684.1 + 43432 0.71 0.387907
Target:  5'- gCCCGGcgagGCCGaGGUCG--GUGCGGcGGg -3'
miRNA:   3'- -GGGCCa---CGGC-CCAGUagCAUGCCaCC- -5'
19110 3' -57.9 NC_004684.1 + 63722 0.71 0.39647
Target:  5'- -gCGGUGCCGGGcCAcCGUACGaUGa -3'
miRNA:   3'- ggGCCACGGCCCaGUaGCAUGCcACc -5'
19110 3' -57.9 NC_004684.1 + 65478 0.71 0.39647
Target:  5'- gCCCGGcagGCCGGGUCcggcagGUGCGGg-- -3'
miRNA:   3'- -GGGCCa--CGGCCCAGuag---CAUGCCacc -5'
19110 3' -57.9 NC_004684.1 + 8297 0.71 0.39647
Target:  5'- aCCCGGUGCCGGaGUgGUUGgcgcugACGccGGa -3'
miRNA:   3'- -GGGCCACGGCC-CAgUAGCa-----UGCcaCC- -5'
19110 3' -57.9 NC_004684.1 + 25533 0.71 0.421978
Target:  5'- gCCGacGCCGGGUCGgugcucaagagccUCGgcGCGGUGGa -3'
miRNA:   3'- gGGCcaCGGCCCAGU-------------AGCa-UGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 39304 0.7 0.441055
Target:  5'- aCCCGGUG-CGGGUCG-CGcgGCGGcccGGc -3'
miRNA:   3'- -GGGCCACgGCCCAGUaGCa-UGCCa--CC- -5'
19110 3' -57.9 NC_004684.1 + 4055 0.7 0.469131
Target:  5'- aCCGGccaucGCCGGGUgAcCGggUGGUGGg -3'
miRNA:   3'- gGGCCa----CGGCCCAgUaGCauGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 36776 0.69 0.498094
Target:  5'- gCCCGGUGCCGacgcuGGUCGgcggCGgcuCGGUc- -3'
miRNA:   3'- -GGGCCACGGC-----CCAGUa---GCau-GCCAcc -5'
19110 3' -57.9 NC_004684.1 + 53014 0.69 0.516846
Target:  5'- gCCCGGUGUCGGucagccaGUCggCGUacaccugcGCGGUGc -3'
miRNA:   3'- -GGGCCACGGCC-------CAGuaGCA--------UGCCACc -5'
19110 3' -57.9 NC_004684.1 + 168 0.69 0.52783
Target:  5'- aCCGGUGaCCGGGUUgGUCGggACcaccaccaaGGUGGc -3'
miRNA:   3'- gGGCCAC-GGCCCAG-UAGCa-UG---------CCACC- -5'
19110 3' -57.9 NC_004684.1 + 39108 0.68 0.548016
Target:  5'- aCCCGGUGaCCGGGUacgccUGcGCGG-GGu -3'
miRNA:   3'- -GGGCCAC-GGCCCAgua--GCaUGCCaCC- -5'
19110 3' -57.9 NC_004684.1 + 36925 0.68 0.578723
Target:  5'- gCCCGGUcgagGCCGGGUgGacaCGccUGCuGGUGGu -3'
miRNA:   3'- -GGGCCA----CGGCCCAgUa--GC--AUG-CCACC- -5'
19110 3' -57.9 NC_004684.1 + 31889 0.68 0.589047
Target:  5'- gCUGGUggacGCCGGGaCGUUGUucGCGGUcGGc -3'
miRNA:   3'- gGGCCA----CGGCCCaGUAGCA--UGCCA-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.