miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 3' -57.9 NC_004684.1 + 168 0.69 0.52783
Target:  5'- aCCGGUGaCCGGGUUgGUCGggACcaccaccaaGGUGGc -3'
miRNA:   3'- gGGCCAC-GGCCCAG-UAGCa-UG---------CCACC- -5'
19110 3' -57.9 NC_004684.1 + 1575 0.67 0.640998
Target:  5'- gCCGGUGCCuccGGGUCAccUGccCGGUGc -3'
miRNA:   3'- gGGCCACGG---CCCAGUa-GCauGCCACc -5'
19110 3' -57.9 NC_004684.1 + 1922 0.73 0.316488
Target:  5'- aCCCGGccUGCCGGGcCugguaccggCGcACGGUGGc -3'
miRNA:   3'- -GGGCC--ACGGCCCaGua-------GCaUGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 2711 0.67 0.640998
Target:  5'- gCCGGUGCCGGGggcaaGUGCGc--- -3'
miRNA:   3'- gGGCCACGGCCCaguagCAUGCcacc -5'
19110 3' -57.9 NC_004684.1 + 2849 0.66 0.686593
Target:  5'- aCCCGGUcaccaaggccgccgaGCCgcugGGcGUCAUCGgUGCcuGGUGGc -3'
miRNA:   3'- -GGGCCA---------------CGG----CC-CAGUAGC-AUG--CCACC- -5'
19110 3' -57.9 NC_004684.1 + 2937 0.67 0.609783
Target:  5'- cUCCGGUGCCGagcaccgaGGcCAUCGgcgcgcugcuguUGCgGGUGGc -3'
miRNA:   3'- -GGGCCACGGC--------CCaGUAGC------------AUG-CCACC- -5'
19110 3' -57.9 NC_004684.1 + 3656 1.11 0.000753
Target:  5'- gCCCGGUGCCGGGUCAUCGUACGGUGGc -3'
miRNA:   3'- -GGGCCACGGCCCAGUAGCAUGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 3958 0.67 0.630589
Target:  5'- aCCGGacgaccccgGCCaGGUCAUCcuGgcCGGUGGc -3'
miRNA:   3'- gGGCCa--------CGGcCCAGUAG--CauGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 4055 0.7 0.469131
Target:  5'- aCCGGccaucGCCGGGUgAcCGggUGGUGGg -3'
miRNA:   3'- gGGCCa----CGGCCCAgUaGCauGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 4282 0.66 0.679379
Target:  5'- aCCCGGagacaaugccGCCGGGUCGcCGUaauguagugcuugcACGGcGGc -3'
miRNA:   3'- -GGGCCa---------CGGCCCAGUaGCA--------------UGCCaCC- -5'
19110 3' -57.9 NC_004684.1 + 5968 0.67 0.6514
Target:  5'- gCCGGUGUCccguauuguGGUCAU-GUACGGcGGg -3'
miRNA:   3'- gGGCCACGGc--------CCAGUAgCAUGCCaCC- -5'
19110 3' -57.9 NC_004684.1 + 6538 0.66 0.70299
Target:  5'- uCCCGGccgacaucgccGCCGuGGaCAUCG-ACGGUGa -3'
miRNA:   3'- -GGGCCa----------CGGC-CCaGUAGCaUGCCACc -5'
19110 3' -57.9 NC_004684.1 + 7652 0.66 0.71316
Target:  5'- gCgUGGUGaCCGGGUCggCGgccUACGucGUGGa -3'
miRNA:   3'- -GgGCCAC-GGCCCAGuaGC---AUGC--CACC- -5'
19110 3' -57.9 NC_004684.1 + 8297 0.71 0.39647
Target:  5'- aCCCGGUGCCGGaGUgGUUGgcgcugACGccGGa -3'
miRNA:   3'- -GGGCCACGGCC-CAgUAGCa-----UGCcaCC- -5'
19110 3' -57.9 NC_004684.1 + 10891 0.67 0.620182
Target:  5'- gCCGGUGaccacCCGGGUCGgcgCGUACaGGc-- -3'
miRNA:   3'- gGGCCAC-----GGCCCAGUa--GCAUG-CCacc -5'
19110 3' -57.9 NC_004684.1 + 15296 0.67 0.620182
Target:  5'- gCUGG-GCCuGGUCGaCGUGgcCGGUGGc -3'
miRNA:   3'- gGGCCaCGGcCCAGUaGCAU--GCCACC- -5'
19110 3' -57.9 NC_004684.1 + 15518 0.72 0.36622
Target:  5'- gCCCGGgGCCGGGcgcuggaggcgcugaUCcgCGU-UGGUGGa -3'
miRNA:   3'- -GGGCCaCGGCCC---------------AGuaGCAuGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 16786 0.67 0.661785
Target:  5'- aCCaGGUG-CGGcG-CGUCGUGUGGUGGg -3'
miRNA:   3'- gGG-CCACgGCC-CaGUAGCAUGCCACC- -5'
19110 3' -57.9 NC_004684.1 + 18069 0.66 0.692758
Target:  5'- gCCCGGUGCCGaccacGGacUCgAUCuucuCGGUGGc -3'
miRNA:   3'- -GGGCCACGGC-----CC--AG-UAGcau-GCCACC- -5'
19110 3' -57.9 NC_004684.1 + 18840 0.67 0.630589
Target:  5'- aCUCGcagGUCGGGUCGUgGU-CGGUGa -3'
miRNA:   3'- -GGGCca-CGGCCCAGUAgCAuGCCACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.