Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19110 | 3' | -57.9 | NC_004684.1 | + | 3958 | 0.67 | 0.630589 |
Target: 5'- aCCGGacgaccccgGCCaGGUCAUCcuGgcCGGUGGc -3' miRNA: 3'- gGGCCa--------CGGcCCAGUAG--CauGCCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 53014 | 0.69 | 0.516846 |
Target: 5'- gCCCGGUGUCGGucagccaGUCggCGUacaccugcGCGGUGc -3' miRNA: 3'- -GGGCCACGGCC-------CAGuaGCA--------UGCCACc -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 168 | 0.69 | 0.52783 |
Target: 5'- aCCGGUGaCCGGGUUgGUCGggACcaccaccaaGGUGGc -3' miRNA: 3'- gGGCCAC-GGCCCAG-UAGCa-UG---------CCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 39108 | 0.68 | 0.548016 |
Target: 5'- aCCCGGUGaCCGGGUacgccUGcGCGG-GGu -3' miRNA: 3'- -GGGCCAC-GGCCCAgua--GCaUGCCaCC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 36925 | 0.68 | 0.578723 |
Target: 5'- gCCCGGUcgagGCCGGGUgGacaCGccUGCuGGUGGu -3' miRNA: 3'- -GGGCCA----CGGCCCAgUa--GC--AUG-CCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 31889 | 0.68 | 0.589047 |
Target: 5'- gCUGGUggacGCCGGGaCGUUGUucGCGGUcGGc -3' miRNA: 3'- gGGCCA----CGGCCCaGUAGCA--UGCCA-CC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 2937 | 0.67 | 0.609783 |
Target: 5'- cUCCGGUGCCGagcaccgaGGcCAUCGgcgcgcugcuguUGCgGGUGGc -3' miRNA: 3'- -GGGCCACGGC--------CCaGUAGC------------AUG-CCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 25874 | 0.67 | 0.620182 |
Target: 5'- cCUCGGccagGCCGGG-CAgaaCGUcaGCGGUGa -3' miRNA: 3'- -GGGCCa---CGGCCCaGUa--GCA--UGCCACc -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 19037 | 0.67 | 0.620182 |
Target: 5'- aCCGGcgGCCGGGcaggUCAUgaaGUGCGGcaggcUGGc -3' miRNA: 3'- gGGCCa-CGGCCC----AGUAg--CAUGCC-----ACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 36776 | 0.69 | 0.498094 |
Target: 5'- gCCCGGUGCCGacgcuGGUCGgcggCGgcuCGGUc- -3' miRNA: 3'- -GGGCCACGGC-----CCAGUa---GCau-GCCAcc -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 4055 | 0.7 | 0.469131 |
Target: 5'- aCCGGccaucGCCGGGUgAcCGggUGGUGGg -3' miRNA: 3'- gGGCCa----CGGCCCAgUaGCauGCCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 25533 | 0.71 | 0.421978 |
Target: 5'- gCCGacGCCGGGUCGgugcucaagagccUCGgcGCGGUGGa -3' miRNA: 3'- gGGCcaCGGCCCAGU-------------AGCa-UGCCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 58318 | 0.73 | 0.294989 |
Target: 5'- aCCGGcgacGCCGGGUCAUgGcgcgccCGGUGGc -3' miRNA: 3'- gGGCCa---CGGCCCAGUAgCau----GCCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 15518 | 0.72 | 0.36622 |
Target: 5'- gCCCGGgGCCGGGcgcuggaggcgcugaUCcgCGU-UGGUGGa -3' miRNA: 3'- -GGGCCaCGGCCC---------------AGuaGCAuGCCACC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 24158 | 0.72 | 0.37115 |
Target: 5'- cUCCGGUGCaGGGUCcgCagGCGGUGc -3' miRNA: 3'- -GGGCCACGgCCCAGuaGcaUGCCACc -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 50681 | 0.72 | 0.379467 |
Target: 5'- gCCCGGUGCCgugcaaucGGGUaccgcgcaGUGCGGUGcGg -3' miRNA: 3'- -GGGCCACGG--------CCCAguag----CAUGCCAC-C- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 43432 | 0.71 | 0.387907 |
Target: 5'- gCCCGGcgagGCCGaGGUCG--GUGCGGcGGg -3' miRNA: 3'- -GGGCCa---CGGC-CCAGUagCAUGCCaCC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 63722 | 0.71 | 0.39647 |
Target: 5'- -gCGGUGCCGGGcCAcCGUACGaUGa -3' miRNA: 3'- ggGCCACGGCCCaGUaGCAUGCcACc -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 8297 | 0.71 | 0.39647 |
Target: 5'- aCCCGGUGCCGGaGUgGUUGgcgcugACGccGGa -3' miRNA: 3'- -GGGCCACGGCC-CAgUAGCa-----UGCcaCC- -5' |
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19110 | 3' | -57.9 | NC_004684.1 | + | 65478 | 0.71 | 0.39647 |
Target: 5'- gCCCGGcagGCCGGGUCcggcagGUGCGGg-- -3' miRNA: 3'- -GGGCCa--CGGCCCAGuag---CAUGCCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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