miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 3' -54.5 NC_004684.1 + 3449 1.12 0.00117
Target:  5'- gGCCAUGUGGUACGGCACCCAGUUCGGc -3'
miRNA:   3'- -CGGUACACCAUGCCGUGGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 39090 0.77 0.267313
Target:  5'- gGCCG-GUGGUGCcuacGCACCCGGUgacCGGg -3'
miRNA:   3'- -CGGUaCACCAUGc---CGUGGGUCAa--GCC- -5'
19112 3' -54.5 NC_004684.1 + 43285 0.75 0.341149
Target:  5'- cGgCGUGccgGGcUGCGGCACCUugaAGUUCGGg -3'
miRNA:   3'- -CgGUACa--CC-AUGCCGUGGG---UCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 55030 0.75 0.349295
Target:  5'- aGCCGaagGUGGUGCGcaguGUGCCCAGcgCGGu -3'
miRNA:   3'- -CGGUa--CACCAUGC----CGUGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 36460 0.75 0.357578
Target:  5'- aCCAUgGUGGacgugagcaagUGCGGCACCgGGUUCGa -3'
miRNA:   3'- cGGUA-CACC-----------AUGCCGUGGgUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 64922 0.74 0.371973
Target:  5'- gGUCAgGUGGUACGGCacgccgagcuggccGCCCAGg-CGGg -3'
miRNA:   3'- -CGGUaCACCAUGCCG--------------UGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 9023 0.72 0.47708
Target:  5'- uGCCGUGcGGgGCGGCAaCCGGcgCGGc -3'
miRNA:   3'- -CGGUACaCCaUGCCGUgGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 32167 0.72 0.497201
Target:  5'- aCCA---GGUACGGCACCCAcuccUCGGa -3'
miRNA:   3'- cGGUacaCCAUGCCGUGGGUca--AGCC- -5'
19112 3' -54.5 NC_004684.1 + 65159 0.71 0.559614
Target:  5'- gGCguUGcGGUugGGCACCaCGGUcUGGa -3'
miRNA:   3'- -CGguACaCCAugCCGUGG-GUCAaGCC- -5'
19112 3' -54.5 NC_004684.1 + 36948 0.71 0.570252
Target:  5'- cGCCugcugGUGGUcaACGaCGgCCAGUUCGGu -3'
miRNA:   3'- -CGGua---CACCA--UGCcGUgGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 50653 0.7 0.602425
Target:  5'- cGCCGUcGggGGUGCGgaccaggcguGCGCCCGGUgccgugcaaUCGGg -3'
miRNA:   3'- -CGGUA-Ca-CCAUGC----------CGUGGGUCA---------AGCC- -5'
19112 3' -54.5 NC_004684.1 + 14169 0.7 0.61321
Target:  5'- uGCCAcgugGUGGUGCugGGCACCCuGgaCGc -3'
miRNA:   3'- -CGGUa---CACCAUG--CCGUGGGuCaaGCc -5'
19112 3' -54.5 NC_004684.1 + 12408 0.7 0.62401
Target:  5'- aGCCGuccgcUGUGGUcgGCGGcCACCC-GUUCa- -3'
miRNA:   3'- -CGGU-----ACACCA--UGCC-GUGGGuCAAGcc -5'
19112 3' -54.5 NC_004684.1 + 46631 0.69 0.631575
Target:  5'- cGCCuccgGUGUGGacggcaccgccUGCGGUGCCUccaggcgcuccucgGGUUCGGg -3'
miRNA:   3'- -CGG----UACACC-----------AUGCCGUGGG--------------UCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 36885 0.69 0.645623
Target:  5'- gGCC--GUGGU-CGGCAaCCAGcUCGGa -3'
miRNA:   3'- -CGGuaCACCAuGCCGUgGGUCaAGCC- -5'
19112 3' -54.5 NC_004684.1 + 11059 0.69 0.645623
Target:  5'- cCCGUcUGGaggACGGCaagguGCUCGGUUCGGg -3'
miRNA:   3'- cGGUAcACCa--UGCCG-----UGGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 20378 0.69 0.649942
Target:  5'- gGCCA-GUcGUuccccgACGGCACCCGGUugaacaccuuccgcaUCGGg -3'
miRNA:   3'- -CGGUaCAcCA------UGCCGUGGGUCA---------------AGCC- -5'
19112 3' -54.5 NC_004684.1 + 44531 0.69 0.656416
Target:  5'- cGCCGUgGUGGccCGGacgaACCCGGU-CGGc -3'
miRNA:   3'- -CGGUA-CACCauGCCg---UGGGUCAaGCC- -5'
19112 3' -54.5 NC_004684.1 + 47133 0.69 0.677927
Target:  5'- cGCCucgGUGGcguagGCGGC-CCCGGUgcccaGGa -3'
miRNA:   3'- -CGGua-CACCa----UGCCGuGGGUCAag---CC- -5'
19112 3' -54.5 NC_004684.1 + 16799 0.68 0.69927
Target:  5'- cGUCGUGUGGUG-GGCGCgCCA-UUCGc -3'
miRNA:   3'- -CGGUACACCAUgCCGUG-GGUcAAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.