miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 3' -54.5 NC_004684.1 + 53523 0.66 0.799542
Target:  5'- gGCCcaggacgGUGUcgucGGUGCGGCguGCCUGGauUUCGGa -3'
miRNA:   3'- -CGG-------UACA----CCAUGCCG--UGGGUC--AAGCC- -5'
19112 3' -54.5 NC_004684.1 + 19499 0.68 0.727669
Target:  5'- aGCCGcugcUGUGGUgggACGGCACgcacuggcucaacgCCAGcugCGGg -3'
miRNA:   3'- -CGGU----ACACCA---UGCCGUG--------------GGUCaa-GCC- -5'
19112 3' -54.5 NC_004684.1 + 51460 0.68 0.730787
Target:  5'- cGCCcgGUGGccgaGGCcCCCAGgaUGGc -3'
miRNA:   3'- -CGGuaCACCaug-CCGuGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 62975 0.68 0.741117
Target:  5'- uGCUcgGUGGUGC-GCACguggCCGGUggcCGGg -3'
miRNA:   3'- -CGGuaCACCAUGcCGUG----GGUCAa--GCC- -5'
19112 3' -54.5 NC_004684.1 + 28056 0.67 0.75134
Target:  5'- uGCCG-GUGGU-CGGC-CCCGG--CGGu -3'
miRNA:   3'- -CGGUaCACCAuGCCGuGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 1388 0.67 0.771426
Target:  5'- uCCggGUGGgGCGGCGgcuaCCGGUaCGGg -3'
miRNA:   3'- cGGuaCACCaUGCCGUg---GGUCAaGCC- -5'
19112 3' -54.5 NC_004684.1 + 57040 0.67 0.781266
Target:  5'- gGUCAcgGUGGgccACGGCA-CCAGcgCGGu -3'
miRNA:   3'- -CGGUa-CACCa--UGCCGUgGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 64907 0.67 0.781266
Target:  5'- aUCA-GUGGgucuugGCGGCgACCCAGguggCGGc -3'
miRNA:   3'- cGGUaCACCa-----UGCCG-UGGGUCaa--GCC- -5'
19112 3' -54.5 NC_004684.1 + 48376 0.67 0.790956
Target:  5'- uGCCgGUGUGGUGCacgaucaGCACCCcGgcgUUGGu -3'
miRNA:   3'- -CGG-UACACCAUGc------CGUGGGuCa--AGCC- -5'
19112 3' -54.5 NC_004684.1 + 40438 0.68 0.720362
Target:  5'- gGCCu--UGGUcaGCGGUGCCCAGg-CGGc -3'
miRNA:   3'- -CGGuacACCA--UGCCGUGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 35235 0.68 0.709853
Target:  5'- uGCCGUaccUGGUGC--CGCCCGGUUCGa -3'
miRNA:   3'- -CGGUAc--ACCAUGccGUGGGUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 16799 0.68 0.69927
Target:  5'- cGUCGUGUGGUG-GGCGCgCCA-UUCGc -3'
miRNA:   3'- -CGGUACACCAUgCCGUG-GGUcAAGCc -5'
19112 3' -54.5 NC_004684.1 + 55030 0.75 0.349295
Target:  5'- aGCCGaagGUGGUGCGcaguGUGCCCAGcgCGGu -3'
miRNA:   3'- -CGGUa--CACCAUGC----CGUGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 36460 0.75 0.357578
Target:  5'- aCCAUgGUGGacgugagcaagUGCGGCACCgGGUUCGa -3'
miRNA:   3'- cGGUA-CACC-----------AUGCCGUGGgUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 36948 0.71 0.570252
Target:  5'- cGCCugcugGUGGUcaACGaCGgCCAGUUCGGu -3'
miRNA:   3'- -CGGua---CACCA--UGCcGUgGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 50653 0.7 0.602425
Target:  5'- cGCCGUcGggGGUGCGgaccaggcguGCGCCCGGUgccgugcaaUCGGg -3'
miRNA:   3'- -CGGUA-Ca-CCAUGC----------CGUGGGUCA---------AGCC- -5'
19112 3' -54.5 NC_004684.1 + 36885 0.69 0.645623
Target:  5'- gGCC--GUGGU-CGGCAaCCAGcUCGGa -3'
miRNA:   3'- -CGGuaCACCAuGCCGUgGGUCaAGCC- -5'
19112 3' -54.5 NC_004684.1 + 11059 0.69 0.645623
Target:  5'- cCCGUcUGGaggACGGCaagguGCUCGGUUCGGg -3'
miRNA:   3'- cGGUAcACCa--UGCCG-----UGGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 44531 0.69 0.656416
Target:  5'- cGCCGUgGUGGccCGGacgaACCCGGU-CGGc -3'
miRNA:   3'- -CGGUA-CACCauGCCg---UGGGUCAaGCC- -5'
19112 3' -54.5 NC_004684.1 + 47133 0.69 0.677927
Target:  5'- cGCCucgGUGGcguagGCGGC-CCCGGUgcccaGGa -3'
miRNA:   3'- -CGGua-CACCa----UGCCGuGGGUCAag---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.