miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 3' -54.5 NC_004684.1 + 1388 0.67 0.771426
Target:  5'- uCCggGUGGgGCGGCGgcuaCCGGUaCGGg -3'
miRNA:   3'- cGGuaCACCaUGCCGUg---GGUCAaGCC- -5'
19112 3' -54.5 NC_004684.1 + 3449 1.12 0.00117
Target:  5'- gGCCAUGUGGUACGGCACCCAGUUCGGc -3'
miRNA:   3'- -CGGUACACCAUGCCGUGGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 9023 0.72 0.47708
Target:  5'- uGCCGUGcGGgGCGGCAaCCGGcgCGGc -3'
miRNA:   3'- -CGGUACaCCaUGCCGUgGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 9590 0.68 0.730787
Target:  5'- gGCCGUGgucgGGUucccaGGUcuugGCCCAGU-CGGu -3'
miRNA:   3'- -CGGUACa---CCAug---CCG----UGGGUCAaGCC- -5'
19112 3' -54.5 NC_004684.1 + 11059 0.69 0.645623
Target:  5'- cCCGUcUGGaggACGGCaagguGCUCGGUUCGGg -3'
miRNA:   3'- cGGUAcACCa--UGCCG-----UGGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 12408 0.7 0.62401
Target:  5'- aGCCGuccgcUGUGGUcgGCGGcCACCC-GUUCa- -3'
miRNA:   3'- -CGGU-----ACACCA--UGCC-GUGGGuCAAGcc -5'
19112 3' -54.5 NC_004684.1 + 14098 0.67 0.75134
Target:  5'- aCCggGUGGUGUGGCucagcCCCGGUgggUGGg -3'
miRNA:   3'- cGGuaCACCAUGCCGu----GGGUCAa--GCC- -5'
19112 3' -54.5 NC_004684.1 + 14169 0.7 0.61321
Target:  5'- uGCCAcgugGUGGUGCugGGCACCCuGgaCGc -3'
miRNA:   3'- -CGGUa---CACCAUG--CCGUGGGuCaaGCc -5'
19112 3' -54.5 NC_004684.1 + 16799 0.68 0.69927
Target:  5'- cGUCGUGUGGUG-GGCGCgCCA-UUCGc -3'
miRNA:   3'- -CGGUACACCAUgCCGUG-GGUcAAGCc -5'
19112 3' -54.5 NC_004684.1 + 19499 0.68 0.727669
Target:  5'- aGCCGcugcUGUGGUgggACGGCACgcacuggcucaacgCCAGcugCGGg -3'
miRNA:   3'- -CGGU----ACACCA---UGCCGUG--------------GGUCaa-GCC- -5'
19112 3' -54.5 NC_004684.1 + 20378 0.69 0.649942
Target:  5'- gGCCA-GUcGUuccccgACGGCACCCGGUugaacaccuuccgcaUCGGg -3'
miRNA:   3'- -CGGUaCAcCA------UGCCGUGGGUCA---------------AGCC- -5'
19112 3' -54.5 NC_004684.1 + 22724 0.66 0.800488
Target:  5'- gGCCGUGgcUGGcACGcGCGaCCGGUUCGu -3'
miRNA:   3'- -CGGUAC--ACCaUGC-CGUgGGUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 28056 0.67 0.75134
Target:  5'- uGCCG-GUGGU-CGGC-CCCGG--CGGu -3'
miRNA:   3'- -CGGUaCACCAuGCCGuGGGUCaaGCC- -5'
19112 3' -54.5 NC_004684.1 + 28572 0.66 0.809849
Target:  5'- cGCCAccggUGUGcgGCGGCugCCuGccggUCGGg -3'
miRNA:   3'- -CGGU----ACACcaUGCCGugGGuCa---AGCC- -5'
19112 3' -54.5 NC_004684.1 + 30141 0.66 0.844554
Target:  5'- gGCgGUGUcugggugauauccGGUGCGaGCA-CCGGUUUGGc -3'
miRNA:   3'- -CGgUACA-------------CCAUGC-CGUgGGUCAAGCC- -5'
19112 3' -54.5 NC_004684.1 + 32167 0.72 0.497201
Target:  5'- aCCA---GGUACGGCACCCAcuccUCGGa -3'
miRNA:   3'- cGGUacaCCAUGCCGUGGGUca--AGCC- -5'
19112 3' -54.5 NC_004684.1 + 32193 0.68 0.69927
Target:  5'- ----gGUGGacacCGGCACCCAGUUCc- -3'
miRNA:   3'- cgguaCACCau--GCCGUGGGUCAAGcc -5'
19112 3' -54.5 NC_004684.1 + 35235 0.68 0.709853
Target:  5'- uGCCGUaccUGGUGC--CGCCCGGUUCGa -3'
miRNA:   3'- -CGGUAc--ACCAUGccGUGGGUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 36460 0.75 0.357578
Target:  5'- aCCAUgGUGGacgugagcaagUGCGGCACCgGGUUCGa -3'
miRNA:   3'- cGGUA-CACC-----------AUGCCGUGGgUCAAGCc -5'
19112 3' -54.5 NC_004684.1 + 36885 0.69 0.645623
Target:  5'- gGCC--GUGGU-CGGCAaCCAGcUCGGa -3'
miRNA:   3'- -CGGuaCACCAuGCCGUgGGUCaAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.