miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 5' -57 NC_004684.1 + 3484 1.12 0.000656
Target:  5'- aCGCCGUUACCCGGUACCUGGACCACCu -3'
miRNA:   3'- -GCGGCAAUGGGCCAUGGACCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 17691 0.82 0.083851
Target:  5'- cCGCCGagcgcgUGCCCGGUGcCCUGGAC-ACCg -3'
miRNA:   3'- -GCGGCa-----AUGGGCCAU-GGACCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 47832 0.8 0.113259
Target:  5'- aCGCCag-GCCCGGagACCUGGcACCGCCc -3'
miRNA:   3'- -GCGGcaaUGGGCCa-UGGACC-UGGUGG- -5'
19112 5' -57 NC_004684.1 + 14561 0.79 0.13313
Target:  5'- cCGCUGgacACCUGGUgcGCCgGGGCCACCg -3'
miRNA:   3'- -GCGGCaa-UGGGCCA--UGGaCCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 41722 0.79 0.136739
Target:  5'- cCGCCGUaggucgcgcccUGCCCGGUACC---GCCGCCg -3'
miRNA:   3'- -GCGGCA-----------AUGGGCCAUGGaccUGGUGG- -5'
19112 5' -57 NC_004684.1 + 40372 0.78 0.148113
Target:  5'- -aCCGgcACCCGGUGCCUGGcuguugAUCGCCg -3'
miRNA:   3'- gcGGCaaUGGGCCAUGGACC------UGGUGG- -5'
19112 5' -57 NC_004684.1 + 26439 0.78 0.152092
Target:  5'- cCGCCGgugGCCCGGUguacggcggcacGCCUGG-CCGCg -3'
miRNA:   3'- -GCGGCaa-UGGGCCA------------UGGACCuGGUGg -5'
19112 5' -57 NC_004684.1 + 66475 0.76 0.204727
Target:  5'- aCGCCGccACCCGGUggcggcuagGCCUuggcggcggccucgcGGGCCGCCu -3'
miRNA:   3'- -GCGGCaaUGGGCCA---------UGGA---------------CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 63260 0.76 0.224372
Target:  5'- gCGCCGaugcgcuCCUGG-ACCUGGAgCCGCCg -3'
miRNA:   3'- -GCGGCaau----GGGCCaUGGACCU-GGUGG- -5'
19112 5' -57 NC_004684.1 + 36042 0.75 0.230107
Target:  5'- cCGCCGUgcagACaCCGGgcACCUGGAUCAgCCc -3'
miRNA:   3'- -GCGGCAa---UG-GGCCa-UGGACCUGGU-GG- -5'
19112 5' -57 NC_004684.1 + 2335 0.75 0.235964
Target:  5'- aCGCCGUcUACCCGGacUGCCgcccugaguucgUGG-CCGCCa -3'
miRNA:   3'- -GCGGCA-AUGGGCC--AUGG------------ACCuGGUGG- -5'
19112 5' -57 NC_004684.1 + 7507 0.75 0.250533
Target:  5'- cCGCCGcaucgggguggaccUGCCCGGcaccgACCUGG-CCGCCg -3'
miRNA:   3'- -GCGGCa-------------AUGGGCCa----UGGACCuGGUGG- -5'
19112 5' -57 NC_004684.1 + 1396 0.75 0.25429
Target:  5'- cCGCCGUUGCaCUGGccagcgACCUGGAggcCUGCCg -3'
miRNA:   3'- -GCGGCAAUG-GGCCa-----UGGACCU---GGUGG- -5'
19112 5' -57 NC_004684.1 + 1474 0.75 0.260011
Target:  5'- gGCCGgacgUGCCCGGUGcggcggcCCUGGugGCCaACCu -3'
miRNA:   3'- gCGGCa---AUGGGCCAU-------GGACC--UGG-UGG- -5'
19112 5' -57 NC_004684.1 + 28251 0.75 0.260653
Target:  5'- gCGCgGUggACCCGGccaGCCUGGugCGCg -3'
miRNA:   3'- -GCGgCAa-UGGGCCa--UGGACCugGUGg -5'
19112 5' -57 NC_004684.1 + 32614 0.74 0.267145
Target:  5'- gGCCG-UACCCGGUGCggagugGGACgaCACCg -3'
miRNA:   3'- gCGGCaAUGGGCCAUGga----CCUG--GUGG- -5'
19112 5' -57 NC_004684.1 + 44466 0.74 0.267145
Target:  5'- aCGCUGgccACCUGcGUGCgCgUGGACCACCg -3'
miRNA:   3'- -GCGGCaa-UGGGC-CAUG-G-ACCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 157 0.74 0.267145
Target:  5'- aCGCCGgucgaaCCGGUgACCggguuggucgGGACCACCa -3'
miRNA:   3'- -GCGGCaaug--GGCCA-UGGa---------CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 55562 0.74 0.267145
Target:  5'- cCGCCGUgGCCCGGUgGCCgggGGuCCaggcACCa -3'
miRNA:   3'- -GCGGCAaUGGGCCA-UGGa--CCuGG----UGG- -5'
19112 5' -57 NC_004684.1 + 15596 0.74 0.267145
Target:  5'- gGCCGUggACCgGGacUACCUGGACgagUACCg -3'
miRNA:   3'- gCGGCAa-UGGgCC--AUGGACCUG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.