miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 5' -57 NC_004684.1 + 21063 0.71 0.40657
Target:  5'- uGCCGgugcugACCgGGcACCUGGGCCGg- -3'
miRNA:   3'- gCGGCaa----UGGgCCaUGGACCUGGUgg -5'
19112 5' -57 NC_004684.1 + 8599 0.73 0.309592
Target:  5'- gCGCCGguggccucgaacaaGCCCGGUGCaCcGGcACCGCCg -3'
miRNA:   3'- -GCGGCaa------------UGGGCCAUG-GaCC-UGGUGG- -5'
19112 5' -57 NC_004684.1 + 61933 0.72 0.347273
Target:  5'- gGCCacGgcACCCGccggGCCUGGugCACCg -3'
miRNA:   3'- gCGG--CaaUGGGCca--UGGACCugGUGG- -5'
19112 5' -57 NC_004684.1 + 15632 0.72 0.347273
Target:  5'- gCGCgCGagGCCgGGUugCUGGACgACUa -3'
miRNA:   3'- -GCG-GCaaUGGgCCAugGACCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 1999 0.72 0.355355
Target:  5'- uGCUG--GCCUGG-GCgCUGGACCGCCc -3'
miRNA:   3'- gCGGCaaUGGGCCaUG-GACCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 11518 0.72 0.355355
Target:  5'- -cCCGgcaccGCUCGGUggGCCUGGGCCACa -3'
miRNA:   3'- gcGGCaa---UGGGCCA--UGGACCUGGUGg -5'
19112 5' -57 NC_004684.1 + 59350 0.72 0.377831
Target:  5'- gGCCGUUgguguugaacacgcGCaCGGUGuCCUGGaACCGCCc -3'
miRNA:   3'- gCGGCAA--------------UGgGCCAU-GGACC-UGGUGG- -5'
19112 5' -57 NC_004684.1 + 14042 0.72 0.380386
Target:  5'- uGCUG-UACCCGGccggUACCUGGuuCCGCg -3'
miRNA:   3'- gCGGCaAUGGGCC----AUGGACCu-GGUGg -5'
19112 5' -57 NC_004684.1 + 42877 0.72 0.388988
Target:  5'- cCGCCGcacGCCCGGccUCUGGcaccgagaccGCCACCg -3'
miRNA:   3'- -GCGGCaa-UGGGCCauGGACC----------UGGUGG- -5'
19112 5' -57 NC_004684.1 + 17530 0.73 0.308856
Target:  5'- aCGCCGgacgACgUGGUcGCCUaccaGGACCGCCu -3'
miRNA:   3'- -GCGGCaa--UGgGCCA-UGGA----CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 51173 0.74 0.287406
Target:  5'- gGCCGaUGCgCCGG-GCCaUGGACCGCg -3'
miRNA:   3'- gCGGCaAUG-GGCCaUGG-ACCUGGUGg -5'
19112 5' -57 NC_004684.1 + 67068 0.74 0.280521
Target:  5'- gCGCCG-UACCCGGUgcgggcguugGCCUcGGCgGCCa -3'
miRNA:   3'- -GCGGCaAUGGGCCA----------UGGAcCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 66475 0.76 0.204727
Target:  5'- aCGCCGccACCCGGUggcggcuagGCCUuggcggcggccucgcGGGCCGCCu -3'
miRNA:   3'- -GCGGCaaUGGGCCA---------UGGA---------------CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 36042 0.75 0.230107
Target:  5'- cCGCCGUgcagACaCCGGgcACCUGGAUCAgCCc -3'
miRNA:   3'- -GCGGCAa---UG-GGCCa-UGGACCUGGU-GG- -5'
19112 5' -57 NC_004684.1 + 2335 0.75 0.235964
Target:  5'- aCGCCGUcUACCCGGacUGCCgcccugaguucgUGG-CCGCCa -3'
miRNA:   3'- -GCGGCA-AUGGGCC--AUGG------------ACCuGGUGG- -5'
19112 5' -57 NC_004684.1 + 28251 0.75 0.260653
Target:  5'- gCGCgGUggACCCGGccaGCCUGGugCGCg -3'
miRNA:   3'- -GCGgCAa-UGGGCCa--UGGACCugGUGg -5'
19112 5' -57 NC_004684.1 + 32614 0.74 0.267145
Target:  5'- gGCCG-UACCCGGUGCggagugGGACgaCACCg -3'
miRNA:   3'- gCGGCaAUGGGCCAUGga----CCUG--GUGG- -5'
19112 5' -57 NC_004684.1 + 157 0.74 0.267145
Target:  5'- aCGCCGgucgaaCCGGUgACCggguuggucgGGACCACCa -3'
miRNA:   3'- -GCGGCaaug--GGCCA-UGGa---------CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 44466 0.74 0.267145
Target:  5'- aCGCUGgccACCUGcGUGCgCgUGGACCACCg -3'
miRNA:   3'- -GCGGCaa-UGGGC-CAUG-G-ACCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 55562 0.74 0.267145
Target:  5'- cCGCCGUgGCCCGGUgGCCgggGGuCCaggcACCa -3'
miRNA:   3'- -GCGGCAaUGGGCCA-UGGa--CCuGG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.