miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19112 5' -57 NC_004684.1 + 157 0.74 0.267145
Target:  5'- aCGCCGgucgaaCCGGUgACCggguuggucgGGACCACCa -3'
miRNA:   3'- -GCGGCaaug--GGCCA-UGGa---------CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 369 0.67 0.647016
Target:  5'- gGCCag-GCCaucguGGUGCCggucaGGAUCACCg -3'
miRNA:   3'- gCGGcaaUGGg----CCAUGGa----CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 532 0.7 0.491438
Target:  5'- gGCCuggACCCGGcgaaagGCCUGGAgggCACCg -3'
miRNA:   3'- gCGGcaaUGGGCCa-----UGGACCUg--GUGG- -5'
19112 5' -57 NC_004684.1 + 599 0.68 0.604684
Target:  5'- aGCUGaccUCCGGgccgccugACCUGGACgACCu -3'
miRNA:   3'- gCGGCaauGGGCCa-------UGGACCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 709 0.7 0.452626
Target:  5'- cCGCCGggugggaagACCUGGgcaccGCCggugaccGGGCCGCCg -3'
miRNA:   3'- -GCGGCaa-------UGGGCCa----UGGa------CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 863 0.66 0.730454
Target:  5'- cCGCCG-UGCCC---GCC-GGGCCGCg -3'
miRNA:   3'- -GCGGCaAUGGGccaUGGaCCUGGUGg -5'
19112 5' -57 NC_004684.1 + 1149 0.66 0.708906
Target:  5'- uGCCGggcgUGCCgaccgugcacuuUGGUGCCgagccgcaggcgcUGGACUACUa -3'
miRNA:   3'- gCGGCa---AUGG------------GCCAUGG-------------ACCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 1239 0.67 0.647016
Target:  5'- uGCCagcaACCCGGU-CaCUGGACCAa- -3'
miRNA:   3'- gCGGcaa-UGGGCCAuG-GACCUGGUgg -5'
19112 5' -57 NC_004684.1 + 1396 0.75 0.25429
Target:  5'- cCGCCGUUGCaCUGGccagcgACCUGGAggcCUGCCg -3'
miRNA:   3'- -GCGGCAAUG-GGCCa-----UGGACCU---GGUGG- -5'
19112 5' -57 NC_004684.1 + 1474 0.75 0.260011
Target:  5'- gGCCGgacgUGCCCGGUGcggcggcCCUGGugGCCaACCu -3'
miRNA:   3'- gCGGCa---AUGGGCCAU-------GGACC--UGG-UGG- -5'
19112 5' -57 NC_004684.1 + 1571 0.67 0.647016
Target:  5'- aGCCG----CCGGUGCCUccGGGUCACCu -3'
miRNA:   3'- gCGGCaaugGGCCAUGGA--CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 1916 0.7 0.47183
Target:  5'- uGCCGg-ACCCGGccugccggGCCUGGuACCGgCg -3'
miRNA:   3'- gCGGCaaUGGGCCa-------UGGACC-UGGUgG- -5'
19112 5' -57 NC_004684.1 + 1999 0.72 0.355355
Target:  5'- uGCUG--GCCUGG-GCgCUGGACCGCCc -3'
miRNA:   3'- gCGGCaaUGGGCCaUG-GACCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 2031 0.72 0.347273
Target:  5'- uGaCCGUcGCCCuGGUgGCCcuggGGGCCGCCa -3'
miRNA:   3'- gC-GGCAaUGGG-CCA-UGGa---CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 2273 0.66 0.709939
Target:  5'- gGCgGgcaUugCCGccaGCCUGGGCCACg -3'
miRNA:   3'- gCGgCa--AugGGCca-UGGACCUGGUGg -5'
19112 5' -57 NC_004684.1 + 2335 0.75 0.235964
Target:  5'- aCGCCGUcUACCCGGacUGCCgcccugaguucgUGG-CCGCCa -3'
miRNA:   3'- -GCGGCA-AUGGGCC--AUGG------------ACCuGGUGG- -5'
19112 5' -57 NC_004684.1 + 2412 0.71 0.424642
Target:  5'- aGCCGcagACCCGcGUcgcggucaucgACCUgaaccGGGCCACCg -3'
miRNA:   3'- gCGGCaa-UGGGC-CA-----------UGGA-----CCUGGUGG- -5'
19112 5' -57 NC_004684.1 + 2441 0.67 0.625839
Target:  5'- gGCCGacaucGCCC---GCCUGGGCgGCCa -3'
miRNA:   3'- gCGGCaa---UGGGccaUGGACCUGgUGG- -5'
19112 5' -57 NC_004684.1 + 2808 0.67 0.669195
Target:  5'- uCGCCGagGCCaagaagcuccugcgCGGguggguggaugagcACCUGGACCACg -3'
miRNA:   3'- -GCGGCaaUGG--------------GCCa-------------UGGACCUGGUGg -5'
19112 5' -57 NC_004684.1 + 2841 0.69 0.552309
Target:  5'- gCGCaccaACCCGGUcACCaaGGCCGCCg -3'
miRNA:   3'- -GCGgcaaUGGGCCA-UGGacCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.