miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 3' -52.8 NC_004684.1 + 283 1.12 0.001406
Target:  5'- uCGUGCACACCUGGCACAAGAGUUCGCu -3'
miRNA:   3'- -GCACGUGUGGACCGUGUUCUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 3370 0.83 0.134207
Target:  5'- --aGCACGCCUGGCGCAAGGGgugugaggUGCa -3'
miRNA:   3'- gcaCGUGUGGACCGUGUUCUCaa------GCG- -5'
19119 3' -52.8 NC_004684.1 + 61609 0.8 0.202454
Target:  5'- --cGCACGCCUGGCGCAGuAGcgCGCu -3'
miRNA:   3'- gcaCGUGUGGACCGUGUUcUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 47233 0.75 0.389984
Target:  5'- --aGCGCACCgccucgGGCGCGAGGGUagcggcugCGCg -3'
miRNA:   3'- gcaCGUGUGGa-----CCGUGUUCUCAa-------GCG- -5'
19119 3' -52.8 NC_004684.1 + 26415 0.72 0.539702
Target:  5'- cCG-GCGCG-CUGGCAgcGGGGUUCGCc -3'
miRNA:   3'- -GCaCGUGUgGACCGUguUCUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 3673 0.72 0.550473
Target:  5'- --cGCACACCcuguUGGCACGcuggcaGGAGaUCGCc -3'
miRNA:   3'- gcaCGUGUGG----ACCGUGU------UCUCaAGCG- -5'
19119 3' -52.8 NC_004684.1 + 26569 0.72 0.556967
Target:  5'- cCG-GCGCGcCCUGGCGCGcggcggugugcgcGGGUUCGCc -3'
miRNA:   3'- -GCaCGUGU-GGACCGUGUu------------CUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 35979 0.72 0.561309
Target:  5'- --cGCAgGCCUGGCGCAcagucGGGGUggUGCc -3'
miRNA:   3'- gcaCGUgUGGACCGUGU-----UCUCAa-GCG- -5'
19119 3' -52.8 NC_004684.1 + 15084 0.72 0.572202
Target:  5'- --cGCGCAgCUGcGCGCGAuGuGUUCGCa -3'
miRNA:   3'- gcaCGUGUgGAC-CGUGUU-CuCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 14981 0.7 0.653769
Target:  5'- gCGUGCaacgcagaaccuGCGCCugcgcgagcaggucaUGGUcgaGCGGGAGUUCGCc -3'
miRNA:   3'- -GCACG------------UGUGG---------------ACCG---UGUUCUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 17178 0.7 0.682372
Target:  5'- gCGUGUucgGCACCUGGCACGAcgccGAcGgcaacgUCGUg -3'
miRNA:   3'- -GCACG---UGUGGACCGUGUU----CU-Ca-----AGCG- -5'
19119 3' -52.8 NC_004684.1 + 4436 0.7 0.693296
Target:  5'- gCGgGC-CugCUGGCGCAgcuGGAGgcCGCa -3'
miRNA:   3'- -GCaCGuGugGACCGUGU---UCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 24145 0.69 0.704161
Target:  5'- cCGcUGCGCACCgcuccGGUGCAGG-GUcCGCa -3'
miRNA:   3'- -GC-ACGUGUGGa----CCGUGUUCuCAaGCG- -5'
19119 3' -52.8 NC_004684.1 + 58074 0.69 0.7246
Target:  5'- cCGUGCGCACC-GuGCAgcucgacCGGGAGcgCGCc -3'
miRNA:   3'- -GCACGUGUGGaC-CGU-------GUUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 15536 0.69 0.725667
Target:  5'- gGUGCugGa--GGUGCAGGAGaUCGCg -3'
miRNA:   3'- gCACGugUggaCCGUGUUCUCaAGCG- -5'
19119 3' -52.8 NC_004684.1 + 14561 0.69 0.735227
Target:  5'- cCGcUGgACACCUGGUGCGccggggccaccgaGGAGgagCGCg -3'
miRNA:   3'- -GC-ACgUGUGGACCGUGU-------------UCUCaa-GCG- -5'
19119 3' -52.8 NC_004684.1 + 1111 0.69 0.736284
Target:  5'- cCG-GCGCAaCUGGCACGAGAuggUCGa -3'
miRNA:   3'- -GCaCGUGUgGACCGUGUUCUca-AGCg -5'
19119 3' -52.8 NC_004684.1 + 26457 0.69 0.736284
Target:  5'- aCGgcgGCACGCCUGGcCGCGAcAGcgUGCc -3'
miRNA:   3'- -GCa--CGUGUGGACC-GUGUUcUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 4978 0.69 0.746796
Target:  5'- -cUGCGCACCUGGgGCAGcgcGAGg--GCa -3'
miRNA:   3'- gcACGUGUGGACCgUGUU---CUCaagCG- -5'
19119 3' -52.8 NC_004684.1 + 46136 0.68 0.767456
Target:  5'- gGUgGUugACCUGGCGCAcGAacaccUCGCg -3'
miRNA:   3'- gCA-CGugUGGACCGUGUuCUca---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.