miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 3' -52.8 NC_004684.1 + 283 1.12 0.001406
Target:  5'- uCGUGCACACCUGGCACAAGAGUUCGCu -3'
miRNA:   3'- -GCACGUGUGGACCGUGUUCUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 1111 0.69 0.736284
Target:  5'- cCG-GCGCAaCUGGCACGAGAuggUCGa -3'
miRNA:   3'- -GCaCGUGUgGACCGUGUUCUca-AGCg -5'
19119 3' -52.8 NC_004684.1 + 1976 0.66 0.860573
Target:  5'- --cGCAgCGCCUGGCGCGcGAac-CGCg -3'
miRNA:   3'- gcaCGU-GUGGACCGUGUuCUcaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 2776 0.67 0.852195
Target:  5'- gGUGUccaGCCUGGacgccaGCGAguucGAGUUCGCc -3'
miRNA:   3'- gCACGug-UGGACCg-----UGUU----CUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 3010 0.67 0.806998
Target:  5'- cCGUGCACACa-GGUGCugaucaccGAGGGgcCGCa -3'
miRNA:   3'- -GCACGUGUGgaCCGUG--------UUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 3279 0.67 0.837425
Target:  5'- -aUGCGCACCgaguucgaggccaUGGCACAGcgcgagcgcgacgacGAGUgggugCGCa -3'
miRNA:   3'- gcACGUGUGG-------------ACCGUGUU---------------CUCAa----GCG- -5'
19119 3' -52.8 NC_004684.1 + 3370 0.83 0.134207
Target:  5'- --aGCACGCCUGGCGCAAGGGgugugaggUGCa -3'
miRNA:   3'- gcaCGUGUGGACCGUGUUCUCaa------GCG- -5'
19119 3' -52.8 NC_004684.1 + 3673 0.72 0.550473
Target:  5'- --cGCACACCcuguUGGCACGcuggcaGGAGaUCGCc -3'
miRNA:   3'- gcaCGUGUGG----ACCGUGU------UCUCaAGCG- -5'
19119 3' -52.8 NC_004684.1 + 3894 0.67 0.806998
Target:  5'- --cGCcCugCUGGCGCAggcgcagcuGGAGgccUCGCg -3'
miRNA:   3'- gcaCGuGugGACCGUGU---------UCUCa--AGCG- -5'
19119 3' -52.8 NC_004684.1 + 4436 0.7 0.693296
Target:  5'- gCGgGC-CugCUGGCGCAgcuGGAGgcCGCa -3'
miRNA:   3'- -GCaCGuGugGACCGUGU---UCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 4978 0.69 0.746796
Target:  5'- -cUGCGCACCUGGgGCAGcgcGAGg--GCa -3'
miRNA:   3'- gcACGUGUGGACCgUGUU---CUCaagCG- -5'
19119 3' -52.8 NC_004684.1 + 6477 0.67 0.843586
Target:  5'- gCGUGCgACGCCgUGGC-CGAGAuggUCGa -3'
miRNA:   3'- -GCACG-UGUGG-ACCGuGUUCUca-AGCg -5'
19119 3' -52.8 NC_004684.1 + 6577 0.67 0.829347
Target:  5'- cCGUGUccgGCACCUGGUACGccacgcaccgaggcGAGUuccuggUCGCc -3'
miRNA:   3'- -GCACG---UGUGGACCGUGUu-------------CUCA------AGCG- -5'
19119 3' -52.8 NC_004684.1 + 6735 0.66 0.88423
Target:  5'- --gGCgACACCUGGCugGcccGGAGccgUCGg -3'
miRNA:   3'- gcaCG-UGUGGACCGugU---UCUCa--AGCg -5'
19119 3' -52.8 NC_004684.1 + 7850 0.67 0.806998
Target:  5'- aCG-GCGCGCgCUGGCgguGCAGGAccuGUgCGCa -3'
miRNA:   3'- -GCaCGUGUG-GACCG---UGUUCU---CAaGCG- -5'
19119 3' -52.8 NC_004684.1 + 9434 0.67 0.825703
Target:  5'- gCGUGCGCACCaGcCGCAGcGAGcacCGCa -3'
miRNA:   3'- -GCACGUGUGGaCcGUGUU-CUCaa-GCG- -5'
19119 3' -52.8 NC_004684.1 + 11390 0.68 0.787553
Target:  5'- gGUGCGCgACUUGccgcGCGCGAuGuGUUCGCc -3'
miRNA:   3'- gCACGUG-UGGAC----CGUGUU-CuCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 13171 0.66 0.88423
Target:  5'- --cGCGCACCUGGUcCAGGAca--GCc -3'
miRNA:   3'- gcaCGUGUGGACCGuGUUCUcaagCG- -5'
19119 3' -52.8 NC_004684.1 + 13732 0.67 0.825703
Target:  5'- cCGUGUGCGCCUGcGCuuCAccgacGGGGUgcuccagCGCa -3'
miRNA:   3'- -GCACGUGUGGAC-CGu-GU-----UCUCAa------GCG- -5'
19119 3' -52.8 NC_004684.1 + 13865 0.66 0.876597
Target:  5'- --cGCGCcgACCUGGCcauuCAGGAGggugUCGa -3'
miRNA:   3'- gcaCGUG--UGGACCGu---GUUCUCa---AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.