miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 3' -52.8 NC_004684.1 + 28273 0.67 0.834752
Target:  5'- gGUGCGCGaggccgCUGGCguggugcucacGCAGGAGccgCGCa -3'
miRNA:   3'- gCACGUGUg-----GACCG-----------UGUUCUCaa-GCG- -5'
19119 3' -52.8 NC_004684.1 + 63447 0.68 0.781588
Target:  5'- gCGUGguCGCCUucgccgcccaguuccGGCAUucGGGggCGCg -3'
miRNA:   3'- -GCACguGUGGA---------------CCGUGuuCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 19801 0.68 0.797363
Target:  5'- gCGgGC-CugCUGGC-CAAgGAGUUCGUc -3'
miRNA:   3'- -GCaCGuGugGACCGuGUU-CUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 25039 0.68 0.797363
Target:  5'- gCG-GCAUcgACgUGGCGCAgcuccAGAaGUUCGCg -3'
miRNA:   3'- -GCaCGUG--UGgACCGUGU-----UCU-CAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 36045 0.67 0.806042
Target:  5'- cCGUGCagACACCgGGCACcuggaucagcccgAGuGAGUUCGa -3'
miRNA:   3'- -GCACG--UGUGGaCCGUG-------------UU-CUCAAGCg -5'
19119 3' -52.8 NC_004684.1 + 3010 0.67 0.806998
Target:  5'- cCGUGCACACa-GGUGCugaucaccGAGGGgcCGCa -3'
miRNA:   3'- -GCACGUGUGgaCCGUG--------UUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 26529 0.67 0.816448
Target:  5'- aCGUGuCGCGCCUGG-GCGgucaggccGGGGUguaCGCg -3'
miRNA:   3'- -GCAC-GUGUGGACCgUGU--------UCUCAa--GCG- -5'
19119 3' -52.8 NC_004684.1 + 31085 0.67 0.816448
Target:  5'- aCGUGC-CGCCgagGGCugGCAGGAcgccgCGCa -3'
miRNA:   3'- -GCACGuGUGGa--CCG--UGUUCUcaa--GCG- -5'
19119 3' -52.8 NC_004684.1 + 18221 0.67 0.834752
Target:  5'- -aUGC-CGCaCUGGgGCAAGGGUcCGUa -3'
miRNA:   3'- gcACGuGUG-GACCgUGUUCUCAaGCG- -5'
19119 3' -52.8 NC_004684.1 + 26457 0.69 0.736284
Target:  5'- aCGgcgGCACGCCUGGcCGCGAcAGcgUGCc -3'
miRNA:   3'- -GCa--CGUGUGGACC-GUGUUcUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 1111 0.69 0.736284
Target:  5'- cCG-GCGCAaCUGGCACGAGAuggUCGa -3'
miRNA:   3'- -GCaCGUGUgGACCGUGUUCUca-AGCg -5'
19119 3' -52.8 NC_004684.1 + 58074 0.69 0.7246
Target:  5'- cCGUGCGCACC-GuGCAgcucgacCGGGAGcgCGCc -3'
miRNA:   3'- -GCACGUGUGGaC-CGU-------GUUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 47233 0.75 0.389984
Target:  5'- --aGCGCACCgccucgGGCGCGAGGGUagcggcugCGCg -3'
miRNA:   3'- gcaCGUGUGGa-----CCGUGUUCUCAa-------GCG- -5'
19119 3' -52.8 NC_004684.1 + 26415 0.72 0.539702
Target:  5'- cCG-GCGCG-CUGGCAgcGGGGUUCGCc -3'
miRNA:   3'- -GCaCGUGUgGACCGUguUCUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 3673 0.72 0.550473
Target:  5'- --cGCACACCcuguUGGCACGcuggcaGGAGaUCGCc -3'
miRNA:   3'- gcaCGUGUGG----ACCGUGU------UCUCaAGCG- -5'
19119 3' -52.8 NC_004684.1 + 26569 0.72 0.556967
Target:  5'- cCG-GCGCGcCCUGGCGCGcggcggugugcgcGGGUUCGCc -3'
miRNA:   3'- -GCaCGUGU-GGACCGUGUu------------CUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 35979 0.72 0.561309
Target:  5'- --cGCAgGCCUGGCGCAcagucGGGGUggUGCc -3'
miRNA:   3'- gcaCGUgUGGACCGUGU-----UCUCAa-GCG- -5'
19119 3' -52.8 NC_004684.1 + 14981 0.7 0.653769
Target:  5'- gCGUGCaacgcagaaccuGCGCCugcgcgagcaggucaUGGUcgaGCGGGAGUUCGCc -3'
miRNA:   3'- -GCACG------------UGUGG---------------ACCG---UGUUCUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 4436 0.7 0.693296
Target:  5'- gCGgGC-CugCUGGCGCAgcuGGAGgcCGCa -3'
miRNA:   3'- -GCaCGuGugGACCGUGU---UCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 24145 0.69 0.704161
Target:  5'- cCGcUGCGCACCgcuccGGUGCAGG-GUcCGCa -3'
miRNA:   3'- -GC-ACGUGUGGa----CCGUGUUCuCAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.