Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 51409 | 0.66 | 0.758687 |
Target: 5'- --gGCCGGGcGUCCuuGggGaacuGCUGGAg -3' miRNA: 3'- ccaUGGUCCcCAGGggCuuU----UGGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 2010 | 0.66 | 0.758687 |
Target: 5'- --cGCCuggguGGGGGUCCgCGAuGACCGu- -3' miRNA: 3'- ccaUGG-----UCCCCAGGgGCUuUUGGCcu -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 22904 | 0.66 | 0.757694 |
Target: 5'- cGGUGCCAGcgacaaggugaccGGGUUCCUGG--ACCGc- -3' miRNA: 3'- -CCAUGGUC-------------CCCAGGGGCUuuUGGCcu -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 7094 | 0.66 | 0.748704 |
Target: 5'- --gGCCcuGGaGG-CCgCCGAGGACCGGGc -3' miRNA: 3'- ccaUGGu-CC-CCaGG-GGCUUUUGGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 25876 | 0.66 | 0.748704 |
Target: 5'- cGGUGCCAGGG--CCUCGuagcGGGCCauGGAc -3' miRNA: 3'- -CCAUGGUCCCcaGGGGCu---UUUGG--CCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 59877 | 0.66 | 0.747699 |
Target: 5'- cGGU-CCGGGcaGGUccaCCCCGAugcggcggcgcacGAACCGGc -3' miRNA: 3'- -CCAuGGUCC--CCA---GGGGCU-------------UUUGGCCu -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 51478 | 0.66 | 0.73861 |
Target: 5'- cGGUGCCGGGuaGG-CCUCu---GCCGGGa -3' miRNA: 3'- -CCAUGGUCC--CCaGGGGcuuuUGGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 8461 | 0.66 | 0.718132 |
Target: 5'- --gGCCuGGcuguuGUCCCCGGAGGCgGGGu -3' miRNA: 3'- ccaUGGuCCc----CAGGGGCUUUUGgCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 60096 | 0.66 | 0.718132 |
Target: 5'- --cACCGGGccaCCCCGAAGuucuCCGGAa -3' miRNA: 3'- ccaUGGUCCccaGGGGCUUUu---GGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 53905 | 0.67 | 0.707768 |
Target: 5'- uGGUugUgacGGGGGUCaggCGAGGugCGGGg -3' miRNA: 3'- -CCAugG---UCCCCAGgg-GCUUUugGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 52536 | 0.67 | 0.707768 |
Target: 5'- uGGaGCCAGGaGGUgUCCGGc-ACCGGu -3' miRNA: 3'- -CCaUGGUCC-CCAgGGGCUuuUGGCCu -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 3911 | 0.67 | 0.707768 |
Target: 5'- gGGUACCGGGaagaCCCCGcuGACCaccuGGAg -3' miRNA: 3'- -CCAUGGUCCcca-GGGGCuuUUGG----CCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 48969 | 0.67 | 0.705687 |
Target: 5'- gGGUgGCCGGGGcGggcgcgucggugCCCUGcuGGCCGGGc -3' miRNA: 3'- -CCA-UGGUCCC-Ca-----------GGGGCuuUUGGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 36132 | 0.67 | 0.697336 |
Target: 5'- cGGUuCCAGGuGUCCC-GGAGGCCGu- -3' miRNA: 3'- -CCAuGGUCCcCAGGGgCUUUUGGCcu -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 15603 | 0.67 | 0.694194 |
Target: 5'- cGGUGCgCuaccGGGUgCCCGAAGgcaacgcgcgcgagGCCGGGu -3' miRNA: 3'- -CCAUG-Guc--CCCAgGGGCUUU--------------UGGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 60362 | 0.67 | 0.686844 |
Target: 5'- cGGUGCCAGGucGGUCaggUUGGGcauGCCGGGg -3' miRNA: 3'- -CCAUGGUCC--CCAGg--GGCUUu--UGGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 62786 | 0.67 | 0.665723 |
Target: 5'- uGGUGCCugcccggcGGGGUUgCCGGgcAGGCgGGGg -3' miRNA: 3'- -CCAUGGu-------CCCCAGgGGCU--UUUGgCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 38815 | 0.67 | 0.665723 |
Target: 5'- cGGUGCCcgccuGGcGGUgCCCGAcgGCCuGGu -3' miRNA: 3'- -CCAUGGu----CC-CCAgGGGCUuuUGG-CCu -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 15922 | 0.68 | 0.633844 |
Target: 5'- aGGUcGCCAuccuGGGGgCCUCGGccACCGGGc -3' miRNA: 3'- -CCA-UGGU----CCCCaGGGGCUuuUGGCCU- -5' |
|||||||
19120 | 3' | -56.4 | NC_004684.1 | + | 11819 | 0.68 | 0.623203 |
Target: 5'- uGGUGCCuGGac-CCCCGGccACCGGGc -3' miRNA: 3'- -CCAUGGuCCccaGGGGCUuuUGGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home