miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19121 5' -56 NC_004684.1 + 49643 0.66 0.735565
Target:  5'- -gGCUcCAGGAGCaccgaCCaCGGCGUGGa- -3'
miRNA:   3'- gaUGAuGUUCUUGg----GG-GCCGCGCCau -5'
19121 5' -56 NC_004684.1 + 6066 0.66 0.725117
Target:  5'- cCUACgccgcCGAGGGCggcggCCCGGCgGCGGUGc -3'
miRNA:   3'- -GAUGau---GUUCUUGg----GGGCCG-CGCCAU- -5'
19121 5' -56 NC_004684.1 + 66756 0.66 0.725116
Target:  5'- gUACaGCAccccGGcgaCCUCGGCGCGGUAc -3'
miRNA:   3'- gAUGaUGU----UCuugGGGGCCGCGCCAU- -5'
19121 5' -56 NC_004684.1 + 38320 0.66 0.718803
Target:  5'- uCUGCUcgguggGCAGGAACugguucagcugcacaCCCCGGUG-GGUGg -3'
miRNA:   3'- -GAUGA------UGUUCUUG---------------GGGGCCGCgCCAU- -5'
19121 5' -56 NC_004684.1 + 39283 0.66 0.714577
Target:  5'- ----aGCAAGGccucgaaccgcACCaCCCGGUGCGGg- -3'
miRNA:   3'- gaugaUGUUCU-----------UGG-GGGCCGCGCCau -5'
19121 5' -56 NC_004684.1 + 46617 0.66 0.714577
Target:  5'- -gGCUuCGGGGccaccGCCUCCGGUGUGGa- -3'
miRNA:   3'- gaUGAuGUUCU-----UGGGGGCCGCGCCau -5'
19121 5' -56 NC_004684.1 + 64341 0.66 0.69327
Target:  5'- -aGCUugGucacguccuuGAACCCggUCGGCGCGGUc -3'
miRNA:   3'- gaUGAugUu---------CUUGGG--GGCCGCGCCAu -5'
19121 5' -56 NC_004684.1 + 34056 0.67 0.66957
Target:  5'- uCUACUuCAAGGGgcacaccggcgaCCCUGGCGCGGc- -3'
miRNA:   3'- -GAUGAuGUUCUUg-----------GGGGCCGCGCCau -5'
19121 5' -56 NC_004684.1 + 32589 0.67 0.66957
Target:  5'- uCUACaaggugUACAAGAACggcguggccguaCCCGGUGCGGa- -3'
miRNA:   3'- -GAUG------AUGUUCUUGg-----------GGGCCGCGCCau -5'
19121 5' -56 NC_004684.1 + 11506 0.67 0.65005
Target:  5'- --cCUGCugGGACUCCCGGCaccgcuCGGUGg -3'
miRNA:   3'- gauGAUGuuCUUGGGGGCCGc-----GCCAU- -5'
19121 5' -56 NC_004684.1 + 18720 0.67 0.648964
Target:  5'- gCU-CUACAu--GCCCggugaaggccucuCCGGCGCGGUGc -3'
miRNA:   3'- -GAuGAUGUucuUGGG-------------GGCCGCGCCAU- -5'
19121 5' -56 NC_004684.1 + 57209 0.67 0.63918
Target:  5'- -cGCUggGCGgucuGGAACuCCUCGaGCGCGGUGg -3'
miRNA:   3'- gaUGA--UGU----UCUUG-GGGGC-CGCGCCAU- -5'
19121 5' -56 NC_004684.1 + 28270 0.67 0.639179
Target:  5'- cCUGgUGCGcGAGgCCgCUGGCGUGGUGc -3'
miRNA:   3'- -GAUgAUGUuCUUgGG-GGCCGCGCCAU- -5'
19121 5' -56 NC_004684.1 + 55400 0.67 0.638092
Target:  5'- --cCUGCGGGGucaugccgucgguGCCgCCGGuCGCGGUGu -3'
miRNA:   3'- gauGAUGUUCU-------------UGGgGGCC-GCGCCAU- -5'
19121 5' -56 NC_004684.1 + 4786 0.67 0.628303
Target:  5'- ----aGCAAGcg-CCUCGGCGCGGUGg -3'
miRNA:   3'- gaugaUGUUCuugGGGGCCGCGCCAU- -5'
19121 5' -56 NC_004684.1 + 37350 0.67 0.628303
Target:  5'- -gGCUcACAGGAucGCCCCCGGUGUc--- -3'
miRNA:   3'- gaUGA-UGUUCU--UGGGGGCCGCGccau -5'
19121 5' -56 NC_004684.1 + 41635 0.67 0.628302
Target:  5'- aUACcaggAgGAGAucGCCUCCGGUGCGGc- -3'
miRNA:   3'- gAUGa---UgUUCU--UGGGGGCCGCGCCau -5'
19121 5' -56 NC_004684.1 + 61306 0.67 0.627215
Target:  5'- --uUUACGAGGccGCCCCCGGCaucggcuaccagcGCGGc- -3'
miRNA:   3'- gauGAUGUUCU--UGGGGGCCG-------------CGCCau -5'
19121 5' -56 NC_004684.1 + 11818 0.68 0.606568
Target:  5'- uUGgUGCcuGGACCCCCGGCcacCGGg- -3'
miRNA:   3'- gAUgAUGuuCUUGGGGGCCGc--GCCau -5'
19121 5' -56 NC_004684.1 + 28422 0.68 0.606568
Target:  5'- -cGC-GCGcGAACaCCUCGGUGCGGUGc -3'
miRNA:   3'- gaUGaUGUuCUUG-GGGGCCGCGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.