miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 51196 0.73 0.317663
Target:  5'- cGCGCGCccuggccguacAUCGUGGCCagcaGGAUcACCu -3'
miRNA:   3'- aCGCGCG-----------UAGCACCGGca--CCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 30418 0.73 0.317663
Target:  5'- gGUGCGCGUCGgcgaaaccgaacUGGCCGUcGuuGACCa -3'
miRNA:   3'- aCGCGCGUAGC------------ACCGGCAcCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 55946 0.73 0.318422
Target:  5'- gGUGCGCGUCGgcccggucagcuccgGGUuggcgaaGUGGGCGGCCg -3'
miRNA:   3'- aCGCGCGUAGCa--------------CCGg------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 15631 0.72 0.325313
Target:  5'- cGCGCGCGagGccgGGuuGcUGGACGACUa -3'
miRNA:   3'- aCGCGCGUagCa--CCggC-ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 27796 0.72 0.325313
Target:  5'- aGCGCuGCGUgGUGGCCcgagcagcuGUugaGGGCGGCCu -3'
miRNA:   3'- aCGCG-CGUAgCACCGG---------CA---CCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16342 0.72 0.325313
Target:  5'- cGgGCGCAUCGUcaccGGCgGUGGccGCAuccuGCCg -3'
miRNA:   3'- aCgCGCGUAGCA----CCGgCACC--UGU----UGG- -5'
19122 3' -57.1 NC_004684.1 + 60953 0.72 0.341021
Target:  5'- aUGCGUGCuguacaccUCGUGGCUGgUGGcguCGGCCu -3'
miRNA:   3'- -ACGCGCGu-------AGCACCGGC-ACCu--GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 46194 0.72 0.346646
Target:  5'- cGCGUGCuuggcccggauaacgUGUGGCCGaguccccucgUGGACAGCUg -3'
miRNA:   3'- aCGCGCGua-------------GCACCGGC----------ACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 62983 0.72 0.35727
Target:  5'- gGUGCGCA-CGUGGCCgGUGGccgggaacGCGAUg -3'
miRNA:   3'- aCGCGCGUaGCACCGG-CACC--------UGUUGg -5'
19122 3' -57.1 NC_004684.1 + 3490 0.72 0.35727
Target:  5'- gGC-CGCAcCGUGGCCGccaGGAC-GCCg -3'
miRNA:   3'- aCGcGCGUaGCACCGGCa--CCUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 18016 0.71 0.365595
Target:  5'- gGCG-GCAacaUCGgcaaGGCCaUGGACAGCCu -3'
miRNA:   3'- aCGCgCGU---AGCa---CCGGcACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16444 0.71 0.365595
Target:  5'- gGCGCacacCAUCGUGcGCC-UGGACGagGCCg -3'
miRNA:   3'- aCGCGc---GUAGCAC-CGGcACCUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 8061 0.71 0.365595
Target:  5'- gGC-CGgGUCGUGGCCGagUGGcCAAUCg -3'
miRNA:   3'- aCGcGCgUAGCACCGGC--ACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 33562 0.71 0.365596
Target:  5'- gGCGCgGCGUCGacaucCCGUGGuCGACCa -3'
miRNA:   3'- aCGCG-CGUAGCacc--GGCACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 62461 0.71 0.365596
Target:  5'- aGCGCuccGgGagGUGGCCGUuGGCGACCg -3'
miRNA:   3'- aCGCG---CgUagCACCGGCAcCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 1108 0.71 0.374054
Target:  5'- gGCaccCGCAaCGUGGCCGUccgcugGGACGACg -3'
miRNA:   3'- aCGc--GCGUaGCACCGGCA------CCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 3541 0.71 0.374054
Target:  5'- cGCGCGCA-CGUGGCacc-GACAGCg -3'
miRNA:   3'- aCGCGCGUaGCACCGgcacCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 8528 0.71 0.374054
Target:  5'- gGCGUGCugugCG-GGCCGgacgaGGugGACCu -3'
miRNA:   3'- aCGCGCGua--GCaCCGGCa----CCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 22703 0.71 0.382645
Target:  5'- gGCgGCGCAggaCGUggccaaGGCCGUGGcuggcacgcGCGACCg -3'
miRNA:   3'- aCG-CGCGUa--GCA------CCGGCACC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 55859 0.71 0.382645
Target:  5'- aGUGCGaCGUCGacgccaaggUGGCCG-GGGCAuggACCu -3'
miRNA:   3'- aCGCGC-GUAGC---------ACCGGCaCCUGU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.