miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 5' -56.2 NC_004684.1 + 49180 0.72 0.344424
Target:  5'- ---cUCGGCGGCGgCGGCGGCGGCGg -3'
miRNA:   3'- cuccAGCCGUCGUgGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 54456 0.72 0.360158
Target:  5'- gGGGGUgccgaCGGCGGCgaaguugGCCGACGGCG-CACc -3'
miRNA:   3'- -CUCCA-----GCCGUCG-------UGGCUGUUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 22348 0.72 0.361
Target:  5'- cAGG-CGGUGGCGgCGGCGGCGGCGg -3'
miRNA:   3'- cUCCaGCCGUCGUgGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 55284 0.72 0.369494
Target:  5'- cGGGGUCGGgGGUugCGugAugGcCGCc -3'
miRNA:   3'- -CUCCAGCCgUCGugGCugUugCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 59316 0.72 0.369494
Target:  5'- cGGGGUCGauGGCGCUGGCAAUGAgcCGCa -3'
miRNA:   3'- -CUCCAGCcgUCGUGGCUGUUGCU--GUG- -5'
19122 5' -56.2 NC_004684.1 + 33830 0.72 0.378124
Target:  5'- -cGGUgugccCGGCGGCGgCGGCAACGGgGCc -3'
miRNA:   3'- cuCCA-----GCCGUCGUgGCUGUUGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 66248 0.72 0.386888
Target:  5'- -cGGUCGGCAcGC-CCGGCAugcCGugGCc -3'
miRNA:   3'- cuCCAGCCGU-CGuGGCUGUu--GCugUG- -5'
19122 5' -56.2 NC_004684.1 + 49236 0.71 0.395785
Target:  5'- cGGGcGUCGGCAcGuCGCCccACAGCGGCGCg -3'
miRNA:   3'- -CUC-CAGCCGU-C-GUGGc-UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 18117 0.71 0.395785
Target:  5'- cGAGGcCGGUguGGaCACCGccaACAugGACGCg -3'
miRNA:   3'- -CUCCaGCCG--UC-GUGGC---UGUugCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 41278 0.71 0.403904
Target:  5'- -cGGUCGGaCAGCGCCGAgGuguuggagaucagGCGAcCGCu -3'
miRNA:   3'- cuCCAGCC-GUCGUGGCUgU-------------UGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 16014 0.71 0.40846
Target:  5'- cGGGGaCGGUGGCGuggucguugacgugcCCGGCGACGACGa -3'
miRNA:   3'- -CUCCaGCCGUCGU---------------GGCUGUUGCUGUg -5'
19122 5' -56.2 NC_004684.1 + 57825 0.71 0.417667
Target:  5'- cAGGUCGGCcacguguucgcggcGCACCGGCuccaacCGGCGCa -3'
miRNA:   3'- cUCCAGCCGu-------------CGUGGCUGuu----GCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 59872 0.71 0.423252
Target:  5'- cAGGUCGGUccgGGCAgguccaccCCGauGCGGCGGCGCa -3'
miRNA:   3'- cUCCAGCCG---UCGU--------GGC--UGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 54060 0.71 0.423252
Target:  5'- cAGGUCGGuCGGguCCGGC-ACGuCGCa -3'
miRNA:   3'- cUCCAGCC-GUCguGGCUGuUGCuGUG- -5'
19122 5' -56.2 NC_004684.1 + 54224 0.71 0.427
Target:  5'- cGAGGUCGGCcagcagcuguuccagGGCACCG-CGcCGGgACa -3'
miRNA:   3'- -CUCCAGCCG---------------UCGUGGCuGUuGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 49055 0.7 0.442186
Target:  5'- -cGGUCGGCuccgggggcGGCACCGGCGuGCGGaACa -3'
miRNA:   3'- cuCCAGCCG---------UCGUGGCUGU-UGCUgUG- -5'
19122 5' -56.2 NC_004684.1 + 11861 0.7 0.451831
Target:  5'- cGGGUacgaacucgUGGCGGCGCUGGCggUGaACACa -3'
miRNA:   3'- cUCCA---------GCCGUCGUGGCUGuuGC-UGUG- -5'
19122 5' -56.2 NC_004684.1 + 26611 0.7 0.451831
Target:  5'- -cGG-CGGCGGCgucAUCGcCAACGACACc -3'
miRNA:   3'- cuCCaGCCGUCG---UGGCuGUUGCUGUG- -5'
19122 5' -56.2 NC_004684.1 + 27264 0.7 0.471459
Target:  5'- cGAGGUCGGUgccgaggccgccAGCGCCcGCuACGGcCACg -3'
miRNA:   3'- -CUCCAGCCG------------UCGUGGcUGuUGCU-GUG- -5'
19122 5' -56.2 NC_004684.1 + 7430 0.7 0.471459
Target:  5'- cGGGUgCGGCacgAGCGCCGccagcACAACGcGCACg -3'
miRNA:   3'- cUCCA-GCCG---UCGUGGC-----UGUUGC-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.