miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 3' -56.3 NC_004684.1 + 3785 1.09 0.000972
Target:  5'- aUGGUCGACAUUGACGCCGCCGCCUUGg -3'
miRNA:   3'- -ACCAGCUGUAACUGCGGCGGCGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 40782 0.81 0.098099
Target:  5'- -cGUUGGCGaUGACGCCGCCGCCggUGg -3'
miRNA:   3'- acCAGCUGUaACUGCGGCGGCGGa-AC- -5'
19126 3' -56.3 NC_004684.1 + 33549 0.79 0.129297
Target:  5'- uUGGUUGGCcccGUUGcCGCCGCCGCCg-- -3'
miRNA:   3'- -ACCAGCUG---UAACuGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 53321 0.73 0.328405
Target:  5'- cUGGucgucguacUCGACGUUGAcgaaCGCCaCCGCCUUGc -3'
miRNA:   3'- -ACC---------AGCUGUAACU----GCGGcGGCGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 28061 0.73 0.328405
Target:  5'- gUGGUCGGCcccggcggUGugGCCggGCCGCCg-- -3'
miRNA:   3'- -ACCAGCUGua------ACugCGG--CGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 42088 0.72 0.352558
Target:  5'- gGGcCGACGaac-CGCCGCCGCCUg- -3'
miRNA:   3'- aCCaGCUGUaacuGCGGCGGCGGAac -5'
19126 3' -56.3 NC_004684.1 + 5890 0.72 0.352558
Target:  5'- cUGG-CGcGCAUcGAgCGCCGCCGCCUg- -3'
miRNA:   3'- -ACCaGC-UGUAaCU-GCGGCGGCGGAac -5'
19126 3' -56.3 NC_004684.1 + 61488 0.72 0.360883
Target:  5'- cGGUCGuGCGcgaucaGCGCCGCCGCCa-- -3'
miRNA:   3'- aCCAGC-UGUaac---UGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 21951 0.72 0.377942
Target:  5'- cGGcgUGACAUUGACGCCuCCGaCUUGc -3'
miRNA:   3'- aCCa-GCUGUAACUGCGGcGGCgGAAC- -5'
19126 3' -56.3 NC_004684.1 + 28382 0.72 0.386672
Target:  5'- aGGUCGAUAccGACGCCGUgcgugaCGCCg-- -3'
miRNA:   3'- aCCAGCUGUaaCUGCGGCG------GCGGaac -5'
19126 3' -56.3 NC_004684.1 + 16517 0.71 0.413646
Target:  5'- gUGGUgGACAccGAUGUgGCCGCCg-- -3'
miRNA:   3'- -ACCAgCUGUaaCUGCGgCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 28896 0.71 0.413646
Target:  5'- -cGUCGGCGUcgguggccuugcUGACGCCGgugcCUGCCUUGu -3'
miRNA:   3'- acCAGCUGUA------------ACUGCGGC----GGCGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 33823 0.71 0.43226
Target:  5'- gUGGUCGACcacgggauGUcGACGCCG-CGCCUc- -3'
miRNA:   3'- -ACCAGCUG--------UAaCUGCGGCgGCGGAac -5'
19126 3' -56.3 NC_004684.1 + 55362 0.7 0.461072
Target:  5'- cUGGUCGAgCAUggccuUGGCcaCCGCCGCCg-- -3'
miRNA:   3'- -ACCAGCU-GUA-----ACUGc-GGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 19319 0.7 0.461072
Target:  5'- aGGcCG-CAU--ACGCCGCCGCCgUGg -3'
miRNA:   3'- aCCaGCuGUAacUGCGGCGGCGGaAC- -5'
19126 3' -56.3 NC_004684.1 + 40430 0.7 0.461072
Target:  5'- aUGG-CGGCGUUG--GCCaCCGCCUUGg -3'
miRNA:   3'- -ACCaGCUGUAACugCGGcGGCGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 38139 0.7 0.4709
Target:  5'- cGGUCGGCggUGAUGCCuugaaugggGCCGCg--- -3'
miRNA:   3'- aCCAGCUGuaACUGCGG---------CGGCGgaac -5'
19126 3' -56.3 NC_004684.1 + 52594 0.7 0.4709
Target:  5'- cGGUgGACAgc-GCGCCGCCGUagUUGu -3'
miRNA:   3'- aCCAgCUGUaacUGCGGCGGCGg-AAC- -5'
19126 3' -56.3 NC_004684.1 + 40999 0.7 0.480833
Target:  5'- gUGG-CGGCGUUGGCcagaUCGCCGCCg-- -3'
miRNA:   3'- -ACCaGCUGUAACUGc---GGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 15073 0.7 0.490867
Target:  5'- aGGUCGACGgccuuaucGGCGCggugGCCGCCcUGg -3'
miRNA:   3'- aCCAGCUGUaa------CUGCGg---CGGCGGaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.