miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 3' -56.3 NC_004684.1 + 428 0.68 0.574129
Target:  5'- gGGUCGACGUggacgagGACaCCGCUGCg--- -3'
miRNA:   3'- aCCAGCUGUAa------CUGcGGCGGCGgaac -5'
19126 3' -56.3 NC_004684.1 + 473 0.66 0.734332
Target:  5'- -cGcCGAgGUUGugGCCGCCaagGCCg-- -3'
miRNA:   3'- acCaGCUgUAACugCGGCGG---CGGaac -5'
19126 3' -56.3 NC_004684.1 + 889 0.69 0.5529
Target:  5'- aGG-CGGCccgcGAgGCCGCCGCCa-- -3'
miRNA:   3'- aCCaGCUGuaa-CUgCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 1938 0.68 0.606295
Target:  5'- cUGGUacCGGCGcacgGugGCCGCgCGCCg-- -3'
miRNA:   3'- -ACCA--GCUGUaa--CugCGGCG-GCGGaac -5'
19126 3' -56.3 NC_004684.1 + 2144 0.67 0.62786
Target:  5'- cUGGgagCGGCGUuucUGugGCCGCuCGCgUa- -3'
miRNA:   3'- -ACCa--GCUGUA---ACugCGGCG-GCGgAac -5'
19126 3' -56.3 NC_004684.1 + 3785 1.09 0.000972
Target:  5'- aUGGUCGACAUUGACGCCGCCGCCUUGg -3'
miRNA:   3'- -ACCAGCUGUAACUGCGGCGGCGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 5890 0.72 0.352558
Target:  5'- cUGG-CGcGCAUcGAgCGCCGCCGCCUg- -3'
miRNA:   3'- -ACCaGC-UGUAaCU-GCGGCGGCGGAac -5'
19126 3' -56.3 NC_004684.1 + 6798 0.67 0.638652
Target:  5'- cUGGaCGACGgccacuacGACGCCGUCgGCCUg- -3'
miRNA:   3'- -ACCaGCUGUaa------CUGCGGCGG-CGGAac -5'
19126 3' -56.3 NC_004684.1 + 7930 0.68 0.563488
Target:  5'- gUGGUgGACAU---CGCCGCCGaCCg-- -3'
miRNA:   3'- -ACCAgCUGUAacuGCGGCGGC-GGaac -5'
19126 3' -56.3 NC_004684.1 + 8310 0.69 0.531912
Target:  5'- gUGGUUGGCGcUGACGCCggaagagguGCgCGCCa-- -3'
miRNA:   3'- -ACCAGCUGUaACUGCGG---------CG-GCGGaac -5'
19126 3' -56.3 NC_004684.1 + 8852 0.66 0.713487
Target:  5'- aGGcCGcucGCAUcuccaACGCCGCCGCCa-- -3'
miRNA:   3'- aCCaGC---UGUAac---UGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 9987 0.67 0.62786
Target:  5'- cGGUCGAg--UGAuaCGCUgGCCGCCUg- -3'
miRNA:   3'- aCCAGCUguaACU--GCGG-CGGCGGAac -5'
19126 3' -56.3 NC_004684.1 + 10163 0.68 0.574129
Target:  5'- aGGUggggcguuugucCGGCAggcUGagcaccaucGCGCCGCCGCCUUc -3'
miRNA:   3'- aCCA------------GCUGUa--AC---------UGCGGCGGCGGAAc -5'
19126 3' -56.3 NC_004684.1 + 11212 0.66 0.734332
Target:  5'- gGGcgcUCGAUA---GCGCCGCCGUCg-- -3'
miRNA:   3'- aCC---AGCUGUaacUGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 12193 0.66 0.692333
Target:  5'- -cGUaGGCAUccaGCGCCGCCGCCa-- -3'
miRNA:   3'- acCAgCUGUAac-UGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 12748 0.66 0.712436
Target:  5'- aGGUCGACGcccucUUGGC-CCGCgcggcugCGCCUg- -3'
miRNA:   3'- aCCAGCUGU-----AACUGcGGCG-------GCGGAac -5'
19126 3' -56.3 NC_004684.1 + 15073 0.7 0.490867
Target:  5'- aGGUCGACGgccuuaucGGCGCggugGCCGCCcUGg -3'
miRNA:   3'- aCCAGCUGUaa------CUGCGg---CGGCGGaAC- -5'
19126 3' -56.3 NC_004684.1 + 16517 0.71 0.413646
Target:  5'- gUGGUgGACAccGAUGUgGCCGCCg-- -3'
miRNA:   3'- -ACCAgCUGUaaCUGCGgCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 18195 0.7 0.490867
Target:  5'- cUGGcCGACcgagcagGcCGCCGCCGCCg-- -3'
miRNA:   3'- -ACCaGCUGuaa----CuGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 18652 0.66 0.681668
Target:  5'- cGGUgaCGACG-UGACcaucguGCCGCCGCUg-- -3'
miRNA:   3'- aCCA--GCUGUaACUG------CGGCGGCGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.