miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 3' -56.3 NC_004684.1 + 42537 0.67 0.64836
Target:  5'- gUGGUCGGCGUgcugacGGCGUUcggcuucggcgugGCCGCCa-- -3'
miRNA:   3'- -ACCAGCUGUAa-----CUGCGG-------------CGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 24168 0.69 0.5529
Target:  5'- gGGUCcGCAggcGGUGCCGCCGCCc-- -3'
miRNA:   3'- aCCAGcUGUaa-CUGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 46543 0.69 0.5529
Target:  5'- cGGUCGGaagaacGACGCCGgUGCgCUUGg -3'
miRNA:   3'- aCCAGCUguaa--CUGCGGCgGCG-GAAC- -5'
19126 3' -56.3 NC_004684.1 + 428 0.68 0.574129
Target:  5'- gGGUCGACGUggacgagGACaCCGCUGCg--- -3'
miRNA:   3'- aCCAGCUGUAa------CUGcGGCGGCGgaac -5'
19126 3' -56.3 NC_004684.1 + 65750 0.68 0.584816
Target:  5'- uUGGccUCGcggGCGUUGGcCGCCGCgCGCCggUGg -3'
miRNA:   3'- -ACC--AGC---UGUAACU-GCGGCG-GCGGa-AC- -5'
19126 3' -56.3 NC_004684.1 + 32274 0.68 0.606295
Target:  5'- cGGUCGgcgaagagguGCAUUGGCGCuCGgCGCUg-- -3'
miRNA:   3'- aCCAGC----------UGUAACUGCG-GCgGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 55147 0.67 0.62786
Target:  5'- cGGUUGugGcggUGGaGCCGCUGCCg-- -3'
miRNA:   3'- aCCAGCugUa--ACUgCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 66458 0.67 0.62786
Target:  5'- gUGG-CGGCGUUGucuccACGCCGCCaCCcggUGg -3'
miRNA:   3'- -ACCaGCUGUAAC-----UGCGGCGGcGGa--AC- -5'
19126 3' -56.3 NC_004684.1 + 6798 0.67 0.638652
Target:  5'- cUGGaCGACGgccacuacGACGCCGUCgGCCUg- -3'
miRNA:   3'- -ACCaGCUGUaa------CUGCGGCGG-CGGAac -5'
19126 3' -56.3 NC_004684.1 + 61074 0.69 0.5529
Target:  5'- gUGG-CGGCAUUGucucCGCaaCGCCGCCa-- -3'
miRNA:   3'- -ACCaGCUGUAACu---GCG--GCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 50028 0.69 0.542372
Target:  5'- cGG-CGGCAgcGugGCCGgUGCCUg- -3'
miRNA:   3'- aCCaGCUGUaaCugCGGCgGCGGAac -5'
19126 3' -56.3 NC_004684.1 + 8310 0.69 0.531912
Target:  5'- gUGGUUGGCGcUGACGCCggaagagguGCgCGCCa-- -3'
miRNA:   3'- -ACCAGCUGUaACUGCGG---------CG-GCGGaac -5'
19126 3' -56.3 NC_004684.1 + 28061 0.73 0.328405
Target:  5'- gUGGUCGGCcccggcggUGugGCCggGCCGCCg-- -3'
miRNA:   3'- -ACCAGCUGua------ACugCGG--CGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 53321 0.73 0.328405
Target:  5'- cUGGucgucguacUCGACGUUGAcgaaCGCCaCCGCCUUGc -3'
miRNA:   3'- -ACC---------AGCUGUAACU----GCGGcGGCGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 21951 0.72 0.377942
Target:  5'- cGGcgUGACAUUGACGCCuCCGaCUUGc -3'
miRNA:   3'- aCCa-GCUGUAACUGCGGcGGCgGAAC- -5'
19126 3' -56.3 NC_004684.1 + 19319 0.7 0.461072
Target:  5'- aGGcCG-CAU--ACGCCGCCGCCgUGg -3'
miRNA:   3'- aCCaGCuGUAacUGCGGCGGCGGaAC- -5'
19126 3' -56.3 NC_004684.1 + 15073 0.7 0.490867
Target:  5'- aGGUCGACGgccuuaucGGCGCggugGCCGCCcUGg -3'
miRNA:   3'- aCCAGCUGUaa------CUGCGg---CGGCGGaAC- -5'
19126 3' -56.3 NC_004684.1 + 29549 0.69 0.500997
Target:  5'- cGGUguacCGAUucUGGgGCCGCUGCCUUa -3'
miRNA:   3'- aCCA----GCUGuaACUgCGGCGGCGGAAc -5'
19126 3' -56.3 NC_004684.1 + 61444 0.69 0.521526
Target:  5'- cGG-CGGCAUUGucuCGCCGCCGgUg-- -3'
miRNA:   3'- aCCaGCUGUAACu--GCGGCGGCgGaac -5'
19126 3' -56.3 NC_004684.1 + 65047 0.69 0.521526
Target:  5'- aGGUCGuccCAggaGAUGaCCGCCGCCa-- -3'
miRNA:   3'- aCCAGCu--GUaa-CUGC-GGCGGCGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.