miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 5' -60.8 NC_004684.1 + 3824 1.11 0.000274
Target:  5'- cUGCUGGGCGCGUUCGGCGUGCCGACCg -3'
miRNA:   3'- -ACGACCCGCGCAAGCCGCACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 2454 0.79 0.064616
Target:  5'- cGcCUGGGCGgccaGcUCGGCGUGCCGuACCa -3'
miRNA:   3'- aC-GACCCGCg---CaAGCCGCACGGC-UGG- -5'
19126 5' -60.8 NC_004684.1 + 11439 0.77 0.089581
Target:  5'- cGCUGGaGCGCGgcgUCGGCGU--CGGCCu -3'
miRNA:   3'- aCGACC-CGCGCa--AGCCGCAcgGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 48979 0.77 0.09713
Target:  5'- gGC-GGGCGCG-UCGGUGcccUGCUGGCCg -3'
miRNA:   3'- aCGaCCCGCGCaAGCCGC---ACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 22200 0.75 0.130246
Target:  5'- cGCUGGaGCGCGgcggggUGGUG-GCCGACUu -3'
miRNA:   3'- aCGACC-CGCGCaa----GCCGCaCGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 42007 0.75 0.140948
Target:  5'- cGCUGuGCGCGg-CGGCGUaggcGCUGACCg -3'
miRNA:   3'- aCGACcCGCGCaaGCCGCA----CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 66890 0.75 0.144691
Target:  5'- aGCUccaGGaGCGUGUcguugUCGGUGcUGCCGACCu -3'
miRNA:   3'- aCGA---CC-CGCGCA-----AGCCGC-ACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 65780 0.74 0.148524
Target:  5'- cGgUGGGCGCGcgcaCGGCGaccgaUGCCGugCa -3'
miRNA:   3'- aCgACCCGCGCaa--GCCGC-----ACGGCugG- -5'
19126 5' -60.8 NC_004684.1 + 18678 0.74 0.162258
Target:  5'- cGCUGGGCGCGa-CGGUaaccaucagccagcaGUcGCUGACCg -3'
miRNA:   3'- aCGACCCGCGCaaGCCG---------------CA-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 24990 0.74 0.164797
Target:  5'- cGCgucGGCGCGUuggggUCGGCGggGCCGAUUg -3'
miRNA:   3'- aCGac-CCGCGCA-----AGCCGCa-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 61354 0.73 0.173521
Target:  5'- aGCUGGGcCGCGa--GGCGcUGgCGGCCu -3'
miRNA:   3'- aCGACCC-GCGCaagCCGC-ACgGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 38507 0.73 0.173521
Target:  5'- cGCcacGGcGCGcCGUUCGGUGUucccacuauGCCGACCg -3'
miRNA:   3'- aCGa--CC-CGC-GCAAGCCGCA---------CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 14352 0.73 0.187378
Target:  5'- gUGCUGGGCaccGCGca-GGUGUacGCCGACUg -3'
miRNA:   3'- -ACGACCCG---CGCaagCCGCA--CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 56719 0.72 0.202201
Target:  5'- cGUUGaGGCGU--UCGGUGUGCCGGUCg -3'
miRNA:   3'- aCGAC-CCGCGcaAGCCGCACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 54590 0.72 0.202201
Target:  5'- ---cGGGCGCGUcgUCGGCGggggUGCCGuuguCCu -3'
miRNA:   3'- acgaCCCGCGCA--AGCCGC----ACGGCu---GG- -5'
19126 5' -60.8 NC_004684.1 + 24509 0.72 0.207364
Target:  5'- cGCaGGGCcgcGCGUUCGGCgGUGCC-AUCu -3'
miRNA:   3'- aCGaCCCG---CGCAAGCCG-CACGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 50606 0.72 0.218031
Target:  5'- gGCggucGGCGgGUcaUCGGCGUGgCCGACa -3'
miRNA:   3'- aCGac--CCGCgCA--AGCCGCAC-GGCUGg -5'
19126 5' -60.8 NC_004684.1 + 37390 0.72 0.218031
Target:  5'- cGCUGGGUGUGcUCGGCagcuUGCCcaACCg -3'
miRNA:   3'- aCGACCCGCGCaAGCCGc---ACGGc-UGG- -5'
19126 5' -60.8 NC_004684.1 + 18424 0.72 0.229165
Target:  5'- gGC-GGGCGCac-CGGCG-GCCGACg -3'
miRNA:   3'- aCGaCCCGCGcaaGCCGCaCGGCUGg -5'
19126 5' -60.8 NC_004684.1 + 64761 0.71 0.246761
Target:  5'- aGCUGGuGCcagGCGUcggucuggcugUCGGCGaaGCUGACCa -3'
miRNA:   3'- aCGACC-CG---CGCA-----------AGCCGCa-CGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.