miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 5' -60.8 NC_004684.1 + 20227 0.68 0.376193
Target:  5'- cGcCUGGGUGCGccUGGCGcGCCGGu- -3'
miRNA:   3'- aC-GACCCGCGCaaGCCGCaCGGCUgg -5'
19126 5' -60.8 NC_004684.1 + 23784 0.71 0.259105
Target:  5'- cGUUGGGCGCGaugaUCGGC--GCUGGCg -3'
miRNA:   3'- aCGACCCGCGCa---AGCCGcaCGGCUGg -5'
19126 5' -60.8 NC_004684.1 + 29235 0.71 0.262905
Target:  5'- aUGCUGuGGCGCGgccccauucaaGGCaucaccGCCGACCg -3'
miRNA:   3'- -ACGAC-CCGCGCaag--------CCGca----CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 19807 0.71 0.268042
Target:  5'- cUGCUGGccaaggaguucgucaGCGCGUgugacggCGGCGcaUGCCGguuGCCg -3'
miRNA:   3'- -ACGACC---------------CGCGCAa------GCCGC--ACGGC---UGG- -5'
19126 5' -60.8 NC_004684.1 + 24929 0.7 0.281238
Target:  5'- cGCUGGGCgGCGaccccgagaauuccUCGGU--GCCGACCc -3'
miRNA:   3'- aCGACCCG-CGCa-------------AGCCGcaCGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 29446 0.7 0.30413
Target:  5'- cGCUGGGCGac--CGGUucgacaucgaccugGUGCgCGACCa -3'
miRNA:   3'- aCGACCCGCgcaaGCCG--------------CACG-GCUGG- -5'
19126 5' -60.8 NC_004684.1 + 26696 0.69 0.341493
Target:  5'- cUGCUGGuGCGCGUgcugcucaaggugcUCGGCGUcgaaaucgagGCCcgcGACa -3'
miRNA:   3'- -ACGACC-CGCGCA--------------AGCCGCA----------CGG---CUGg -5'
19126 5' -60.8 NC_004684.1 + 15584 0.69 0.343838
Target:  5'- cGCgagaaggGGGCGCGcUCGGUGcGCU-ACCg -3'
miRNA:   3'- aCGa------CCCGCGCaAGCCGCaCGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 9198 0.68 0.367914
Target:  5'- gGUUGGGCGCaGUggGcGCGUGaCCGgguggGCCa -3'
miRNA:   3'- aCGACCCGCG-CAagC-CGCAC-GGC-----UGG- -5'
19126 5' -60.8 NC_004684.1 + 2131 0.71 0.252871
Target:  5'- aGCUGGaccugcGUGCGUUCGGCGcGUCGGu- -3'
miRNA:   3'- aCGACC------CGCGCAAGCCGCaCGGCUgg -5'
19126 5' -60.8 NC_004684.1 + 42512 0.71 0.250413
Target:  5'- cGCgaucaacGGCGCGcucaccgccguggUCGGCGUGCUGACg -3'
miRNA:   3'- aCGac-----CCGCGCa------------AGCCGCACGGCUGg -5'
19126 5' -60.8 NC_004684.1 + 64761 0.71 0.246761
Target:  5'- aGCUGGuGCcagGCGUcggucuggcugUCGGCGaaGCUGACCa -3'
miRNA:   3'- aCGACC-CG---CGCA-----------AGCCGCa-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 2454 0.79 0.064616
Target:  5'- cGcCUGGGCGgccaGcUCGGCGUGCCGuACCa -3'
miRNA:   3'- aC-GACCCGCg---CaAGCCGCACGGC-UGG- -5'
19126 5' -60.8 NC_004684.1 + 48979 0.77 0.09713
Target:  5'- gGC-GGGCGCG-UCGGUGcccUGCUGGCCg -3'
miRNA:   3'- aCGaCCCGCGCaAGCCGC---ACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 65780 0.74 0.148524
Target:  5'- cGgUGGGCGCGcgcaCGGCGaccgaUGCCGugCa -3'
miRNA:   3'- aCgACCCGCGCaa--GCCGC-----ACGGCugG- -5'
19126 5' -60.8 NC_004684.1 + 18678 0.74 0.162258
Target:  5'- cGCUGGGCGCGa-CGGUaaccaucagccagcaGUcGCUGACCg -3'
miRNA:   3'- aCGACCCGCGCaaGCCG---------------CA-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 24509 0.72 0.207364
Target:  5'- cGCaGGGCcgcGCGUUCGGCgGUGCC-AUCu -3'
miRNA:   3'- aCGaCCCG---CGCAAGCCG-CACGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 37390 0.72 0.218031
Target:  5'- cGCUGGGUGUGcUCGGCagcuUGCCcaACCg -3'
miRNA:   3'- aCGACCCGCGCaAGCCGc---ACGGc-UGG- -5'
19126 5' -60.8 NC_004684.1 + 50606 0.72 0.218031
Target:  5'- gGCggucGGCGgGUcaUCGGCGUGgCCGACa -3'
miRNA:   3'- aCGac--CCGCgCA--AGCCGCAC-GGCUGg -5'
19126 5' -60.8 NC_004684.1 + 18424 0.72 0.229165
Target:  5'- gGC-GGGCGCac-CGGCG-GCCGACg -3'
miRNA:   3'- aCGaCCCGCGcaaGCCGCaCGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.