miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 5' -60.8 NC_004684.1 + 1080 0.66 0.504252
Target:  5'- cGCUGGaCGUGaUCGGUGaccagGCCGcgACCc -3'
miRNA:   3'- aCGACCcGCGCaAGCCGCa----CGGC--UGG- -5'
19126 5' -60.8 NC_004684.1 + 2131 0.71 0.252871
Target:  5'- aGCUGGaccugcGUGCGUUCGGCGcGUCGGu- -3'
miRNA:   3'- aCGACC------CGCGCAAGCCGCaCGGCUgg -5'
19126 5' -60.8 NC_004684.1 + 2454 0.79 0.064616
Target:  5'- cGcCUGGGCGgccaGcUCGGCGUGCCGuACCa -3'
miRNA:   3'- aC-GACCCGCg---CaAGCCGCACGGC-UGG- -5'
19126 5' -60.8 NC_004684.1 + 2873 0.69 0.336068
Target:  5'- cGCUGGGCGUcaUCGGUGccugguggcaGCCGuuCCa -3'
miRNA:   3'- aCGACCCGCGcaAGCCGCa---------CGGCu-GG- -5'
19126 5' -60.8 NC_004684.1 + 3824 1.11 0.000274
Target:  5'- cUGCUGGGCGCGUUCGGCGUGCCGACCg -3'
miRNA:   3'- -ACGACCCGCGCAAGCCGCACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 4023 0.66 0.464592
Target:  5'- gGCU-GGCGCGUcggccgcUCGGUGcGCUGGgCg -3'
miRNA:   3'- aCGAcCCGCGCA-------AGCCGCaCGGCUgG- -5'
19126 5' -60.8 NC_004684.1 + 4767 0.67 0.407898
Target:  5'- cGCcuucGuGCGCGUcgccagcaagcgccUCGGCGcggugGCCGACCg -3'
miRNA:   3'- aCGa---CcCGCGCA--------------AGCCGCa----CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 5791 0.68 0.393123
Target:  5'- cUGCgccaGGcGUGCGaggUCGGgaCGUGCCGcACCg -3'
miRNA:   3'- -ACGa---CC-CGCGCa--AGCC--GCACGGC-UGG- -5'
19126 5' -60.8 NC_004684.1 + 5887 0.66 0.484711
Target:  5'- cUGCUGGcGCGCa-UCGaGCGccGCCG-CCu -3'
miRNA:   3'- -ACGACC-CGCGcaAGC-CGCa-CGGCuGG- -5'
19126 5' -60.8 NC_004684.1 + 6773 0.71 0.252871
Target:  5'- cGCaUGGGCGaCGUgcgcCGG-GUGaCCGGCCu -3'
miRNA:   3'- aCG-ACCCGC-GCAa---GCCgCAC-GGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 6834 0.67 0.456104
Target:  5'- aGCUGGuCGaGUUCGaGgGUGUCGACg -3'
miRNA:   3'- aCGACCcGCgCAAGC-CgCACGGCUGg -5'
19126 5' -60.8 NC_004684.1 + 7221 0.68 0.359761
Target:  5'- cGCgucugGGaGCGCGUggaGGUGUGCCcgGugCa -3'
miRNA:   3'- aCGa----CC-CGCGCAag-CCGCACGG--CugG- -5'
19126 5' -60.8 NC_004684.1 + 7585 0.68 0.401772
Target:  5'- gGCUGGuGCGCGgcaaccCGGUG-GUCGugUa -3'
miRNA:   3'- aCGACC-CGCGCaa----GCCGCaCGGCugG- -5'
19126 5' -60.8 NC_004684.1 + 7837 0.66 0.514149
Target:  5'- cGCUGGugcgacaacgGCGCGcgCuGGCGgUGCagGACCu -3'
miRNA:   3'- aCGACC----------CGCGCaaG-CCGC-ACGg-CUGG- -5'
19126 5' -60.8 NC_004684.1 + 7916 0.68 0.359761
Target:  5'- cGCUGGcCGCGcaggUGGUGgacaucgccGCCGACCg -3'
miRNA:   3'- aCGACCcGCGCaa--GCCGCa--------CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 8175 0.66 0.514149
Target:  5'- cGCcggGGGCGCGcugggccaGGCGcaGCUGAUCa -3'
miRNA:   3'- aCGa--CCCGCGCaag-----CCGCa-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 8515 0.71 0.252871
Target:  5'- gUGCUGGGauUGU--GGCGUGCUGugCg -3'
miRNA:   3'- -ACGACCCgcGCAagCCGCACGGCugG- -5'
19126 5' -60.8 NC_004684.1 + 9198 0.68 0.367914
Target:  5'- gGUUGGGCGCaGUggGcGCGUGaCCGgguggGCCa -3'
miRNA:   3'- aCGACCCGCG-CAagC-CGCAC-GGC-----UGG- -5'
19126 5' -60.8 NC_004684.1 + 9541 0.66 0.46649
Target:  5'- aGCUGGuGCGCcgGUUggagcCGGUGcgccgcgaacacgugGCCGACCu -3'
miRNA:   3'- aCGACC-CGCG--CAA-----GCCGCa--------------CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 10590 0.67 0.449559
Target:  5'- gGCUGGuucggcgcgcgagguGCGCaacugccguugccGUaUgGGCGUGCUGGCCg -3'
miRNA:   3'- aCGACC---------------CGCG-------------CA-AgCCGCACGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.