Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19143 | 5' | -55.2 | NC_004684.1 | + | 6007 | 0.66 | 0.745692 |
Target: 5'- gGCGCACcauCGG--ACGCgGugGCCUu -3' miRNA: 3'- aCGCGUGau-GCUguUGCGaCugCGGA- -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 35620 | 0.66 | 0.776151 |
Target: 5'- cGCgGCACUACuuuCcGCGCgugGugGCCg -3' miRNA: 3'- aCG-CGUGAUGcu-GuUGCGa--CugCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 63364 | 0.66 | 0.755973 |
Target: 5'- aGCGCACcgaGCGGcCGACGCgccaGCCg -3' miRNA: 3'- aCGCGUGa--UGCU-GUUGCGacugCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 11600 | 0.66 | 0.766129 |
Target: 5'- gGUGCGCcuggACGACGGCaccgaGCUGGCcgucggccGCCUg -3' miRNA: 3'- aCGCGUGa---UGCUGUUG-----CGACUG--------CGGA- -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 55934 | 0.66 | 0.766129 |
Target: 5'- gGUGgACcgggGCGAggcCGACGCcGACGCCg -3' miRNA: 3'- aCGCgUGa---UGCU---GUUGCGaCUGCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 30298 | 0.66 | 0.766129 |
Target: 5'- gGCGCuaucgGCUACGACGACGaggucggGGCaccgGCCa -3' miRNA: 3'- aCGCG-----UGAUGCUGUUGCga-----CUG----CGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 35952 | 0.66 | 0.775155 |
Target: 5'- gGCgGCuguuCUACGACAGCGacuccacgcaggcCUGGCGCa- -3' miRNA: 3'- aCG-CGu---GAUGCUGUUGC-------------GACUGCGga -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 56693 | 0.66 | 0.780118 |
Target: 5'- gGCGCagaaGCUgggcccgggggugaaGCuGGCggUGCUGAUGCCg -3' miRNA: 3'- aCGCG----UGA---------------UG-CUGuuGCGACUGCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 8996 | 0.66 | 0.776151 |
Target: 5'- --gGUGCUGCGcACggUGCUGAUGCg- -3' miRNA: 3'- acgCGUGAUGC-UGuuGCGACUGCGga -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 49409 | 0.66 | 0.745692 |
Target: 5'- aGCGCcaccaccuggaGCUugGACAugGUcuUGGUGCCg -3' miRNA: 3'- aCGCG-----------UGAugCUGUugCG--ACUGCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 8807 | 0.66 | 0.745692 |
Target: 5'- cGCGCAUgUACGA-GGCGCUGcgGCGCa- -3' miRNA: 3'- aCGCGUG-AUGCUgUUGCGAC--UGCGga -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 33095 | 0.66 | 0.776151 |
Target: 5'- cGUgGCGCUGcCGACGcagGCGCUcGCGCUg -3' miRNA: 3'- aCG-CGUGAU-GCUGU---UGCGAcUGCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 53593 | 0.66 | 0.732158 |
Target: 5'- gGCGUugcggGCGACAccGCGCUGGaggcgcagguugguCGCCUg -3' miRNA: 3'- aCGCGuga--UGCUGU--UGCGACU--------------GCGGA- -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 41779 | 0.66 | 0.766129 |
Target: 5'- gGCGUACggacGCGGCcaggUGCcGACGCCg -3' miRNA: 3'- aCGCGUGa---UGCUGuu--GCGaCUGCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 9673 | 0.66 | 0.776151 |
Target: 5'- aGCGCGCggugUACGGCGA-GCUGACcaaaaCCa -3' miRNA: 3'- aCGCGUG----AUGCUGUUgCGACUGc----GGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 62635 | 0.66 | 0.755973 |
Target: 5'- cGCGCACgaaGGCGGCGU--AgGCCUg -3' miRNA: 3'- aCGCGUGaugCUGUUGCGacUgCGGA- -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 37092 | 0.66 | 0.749818 |
Target: 5'- gUGCGCgauGCUGCGGagAACGUUGAggagggcuggcgugcCGCCa -3' miRNA: 3'- -ACGCG---UGAUGCUg-UUGCGACU---------------GCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 53174 | 0.66 | 0.776151 |
Target: 5'- aUGCGUucGCcgAUGGCAcCGUUGACGCa- -3' miRNA: 3'- -ACGCG--UGa-UGCUGUuGCGACUGCGga -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 54236 | 0.66 | 0.745692 |
Target: 5'- gGUGCGCgucacGCGucaGCGACGCgaGGCGCUg -3' miRNA: 3'- aCGCGUGa----UGC---UGUUGCGa-CUGCGGa -5' |
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19143 | 5' | -55.2 | NC_004684.1 | + | 63588 | 0.66 | 0.744657 |
Target: 5'- cUGCGCGgcGCGGCGGugguuacCGCcucgGACGCCa -3' miRNA: 3'- -ACGCGUgaUGCUGUU-------GCGa---CUGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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