miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 5' -55.2 NC_004684.1 + 11698 1.08 0.001394
Target:  5'- cUGCGCACUACGACAACGCUGACGCCUg -3'
miRNA:   3'- -ACGCGUGAUGCUGUUGCGACUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 5300 0.82 0.092833
Target:  5'- aGCGCcaGCUACGACGacGCGCUGGCGaCCg -3'
miRNA:   3'- aCGCG--UGAUGCUGU--UGCGACUGC-GGa -5'
19143 5' -55.2 NC_004684.1 + 7396 0.79 0.161758
Target:  5'- aUGCGCccgcuGCUGCGGuucCGGCGCUGGCGCUa -3'
miRNA:   3'- -ACGCG-----UGAUGCU---GUUGCGACUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 44657 0.77 0.200495
Target:  5'- cUGCGUcacccgcuGCUGCGGCGGCGC-GAUGCCg -3'
miRNA:   3'- -ACGCG--------UGAUGCUGUUGCGaCUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 55189 0.76 0.228624
Target:  5'- -aCGCACcgcugGCGGCGGCGCUGgAUGCCUa -3'
miRNA:   3'- acGCGUGa----UGCUGUUGCGAC-UGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 30245 0.74 0.309752
Target:  5'- gGCGCGCUcccagaacugGCGGCGcaguGCGCUGGCGgCa -3'
miRNA:   3'- aCGCGUGA----------UGCUGU----UGCGACUGCgGa -5'
19143 5' -55.2 NC_004684.1 + 19122 0.74 0.309752
Target:  5'- gUGCGCAUgguggccgACGACAACG--GACGCCUc -3'
miRNA:   3'- -ACGCGUGa-------UGCUGUUGCgaCUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 59135 0.74 0.316648
Target:  5'- gGCGCACgugGCGGgacugcauguuguCGGCGCUGGUGCCUg -3'
miRNA:   3'- aCGCGUGa--UGCU-------------GUUGCGACUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 19752 0.74 0.325233
Target:  5'- cGcCGCACUggccguccACGACAAgGCcGACGCCg -3'
miRNA:   3'- aC-GCGUGA--------UGCUGUUgCGaCUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 23786 0.74 0.333186
Target:  5'- uUGgGCGCgAUGAuCGGCGCUGGCGUCa -3'
miRNA:   3'- -ACgCGUGaUGCU-GUUGCGACUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 50017 0.73 0.341281
Target:  5'- gUGCGCACcgucgGCGGCAGCGUggccGGUGCCUg -3'
miRNA:   3'- -ACGCGUGa----UGCUGUUGCGa---CUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 61495 0.73 0.341281
Target:  5'- cGCGCAg-GCGGCGGCGCUcGAUGCg- -3'
miRNA:   3'- aCGCGUgaUGCUGUUGCGA-CUGCGga -5'
19143 5' -55.2 NC_004684.1 + 19859 0.73 0.366411
Target:  5'- cGCGCACcguggUGCaGACAACGCgccagGGCGUCa -3'
miRNA:   3'- aCGCGUG-----AUG-CUGUUGCGa----CUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 663 0.73 0.366411
Target:  5'- cGaCGCGC-ACGACAGCGU--GCGCCUg -3'
miRNA:   3'- aC-GCGUGaUGCUGUUGCGacUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 3543 0.73 0.366411
Target:  5'- cGCGCACguggcacCGACAGCGU--GCGCCg -3'
miRNA:   3'- aCGCGUGau-----GCUGUUGCGacUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 55854 0.73 0.375066
Target:  5'- cGUGCAgUGCGACGucgACGCcaagGugGCCg -3'
miRNA:   3'- aCGCGUgAUGCUGU---UGCGa---CugCGGa -5'
19143 5' -55.2 NC_004684.1 + 11099 0.73 0.383858
Target:  5'- gGCGCGCcAgGGCcGgGCUGAUGCCUu -3'
miRNA:   3'- aCGCGUGaUgCUGuUgCGACUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 42120 0.72 0.392786
Target:  5'- cGCGCGCgacAUGGuguuCAACGCcGACGCCa -3'
miRNA:   3'- aCGCGUGa--UGCU----GUUGCGaCUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 62941 0.72 0.401848
Target:  5'- cGCGCACgUGCGGCcuccaGCUG-CGCCa -3'
miRNA:   3'- aCGCGUG-AUGCUGuug--CGACuGCGGa -5'
19143 5' -55.2 NC_004684.1 + 62952 0.72 0.411042
Target:  5'- gGCGCGCgcCGACGAUGgUGGCGUg- -3'
miRNA:   3'- aCGCGUGauGCUGUUGCgACUGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.