miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 5' -55.2 NC_004684.1 + 663 0.73 0.366411
Target:  5'- cGaCGCGC-ACGACAGCGU--GCGCCUg -3'
miRNA:   3'- aC-GCGUGaUGCUGUUGCGacUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 1082 0.68 0.638478
Target:  5'- aGCGCuACUACG-CGcCGCUGcCGUCg -3'
miRNA:   3'- aCGCG-UGAUGCuGUuGCGACuGCGGa -5'
19143 5' -55.2 NC_004684.1 + 1189 0.7 0.530475
Target:  5'- gGCGCuggacuACUACGGCaAGCGC-GGCGUCg -3'
miRNA:   3'- aCGCG------UGAUGCUG-UUGCGaCUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 1512 0.7 0.509554
Target:  5'- cUGCGCGCcgcgcucaacgGCGACGACGC-GAC-CCUg -3'
miRNA:   3'- -ACGCGUGa----------UGCUGUUGCGaCUGcGGA- -5'
19143 5' -55.2 NC_004684.1 + 1635 0.7 0.499223
Target:  5'- gGCGCGCgGCGGcCAACGCccgcGAgGCCa -3'
miRNA:   3'- aCGCGUGaUGCU-GUUGCGa---CUgCGGa -5'
19143 5' -55.2 NC_004684.1 + 1769 0.67 0.682016
Target:  5'- cUGCGCGCgu-GGCugGACGCcaaccagGACGCCg -3'
miRNA:   3'- -ACGCGUGaugCUG--UUGCGa------CUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 1959 0.7 0.499223
Target:  5'- cGCGCGCcgcACGcCAGCGCa-GCGCCUg -3'
miRNA:   3'- aCGCGUGa--UGCuGUUGCGacUGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 2531 0.7 0.530475
Target:  5'- cUGCGgaCGCUGCGGCAccugcguggaGCGCgcgGAgGCCUu -3'
miRNA:   3'- -ACGC--GUGAUGCUGU----------UGCGa--CUgCGGA- -5'
19143 5' -55.2 NC_004684.1 + 2740 0.69 0.550633
Target:  5'- cUGCGCGC--CGACAucgcgguGCGCcacGACGCCg -3'
miRNA:   3'- -ACGCGUGauGCUGU-------UGCGa--CUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 2995 0.72 0.411042
Target:  5'- gGCGCACcuuCGuCAccAUGCUGAUGCCg -3'
miRNA:   3'- aCGCGUGau-GCuGU--UGCGACUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 3543 0.73 0.366411
Target:  5'- cGCGCACguggcacCGACAGCGU--GCGCCg -3'
miRNA:   3'- aCGCGUGau-----GCUGUUGCGacUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 3874 0.67 0.723745
Target:  5'- cGCGaGCUGCGACGccaggccGCccuGCUGGCGCa- -3'
miRNA:   3'- aCGCgUGAUGCUGU-------UG---CGACUGCGga -5'
19143 5' -55.2 NC_004684.1 + 4008 0.67 0.7248
Target:  5'- gUGCGCccaccaccuGCUGCcguucaccGGCAugGCgacgGugGCCUa -3'
miRNA:   3'- -ACGCG---------UGAUG--------CUGUugCGa---CugCGGA- -5'
19143 5' -55.2 NC_004684.1 + 4231 0.68 0.649396
Target:  5'- aUGCGC-CUGCG-CGGCGCgcagGA-GCCg -3'
miRNA:   3'- -ACGCGuGAUGCuGUUGCGa---CUgCGGa -5'
19143 5' -55.2 NC_004684.1 + 4326 0.68 0.649396
Target:  5'- gGCGCACUggagugccuAUGACAcccacCGCUGAgGUCUc -3'
miRNA:   3'- aCGCGUGA---------UGCUGUu----GCGACUgCGGA- -5'
19143 5' -55.2 NC_004684.1 + 4978 0.7 0.509554
Target:  5'- cUGCGCAcCUGgGGCAGCGCgagGGCaaggGCCc -3'
miRNA:   3'- -ACGCGU-GAUgCUGUUGCGa--CUG----CGGa -5'
19143 5' -55.2 NC_004684.1 + 5300 0.82 0.092833
Target:  5'- aGCGCcaGCUACGACGacGCGCUGGCGaCCg -3'
miRNA:   3'- aCGCG--UGAUGCUGU--UGCGACUGC-GGa -5'
19143 5' -55.2 NC_004684.1 + 5879 0.67 0.683097
Target:  5'- gGCaGCACcagccugaccgggugGCGGCGGCGCUGAuCGCg- -3'
miRNA:   3'- aCG-CGUGa--------------UGCUGUUGCGACU-GCGga -5'
19143 5' -55.2 NC_004684.1 + 6007 0.66 0.745692
Target:  5'- gGCGCACcauCGG--ACGCgGugGCCUu -3'
miRNA:   3'- aCGCGUGau-GCUguUGCGaCugCGGA- -5'
19143 5' -55.2 NC_004684.1 + 6413 0.68 0.649396
Target:  5'- gGUGUACagcucgGCGGCGGCGUgaACGCCUu -3'
miRNA:   3'- aCGCGUGa-----UGCUGUUGCGacUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.