miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 5' -53.9 NC_004684.1 + 3572 0.66 0.807143
Target:  5'- cGUGgUGCGCcacAGCGGgGACGuggaguACgUCGCg -3'
miRNA:   3'- -CACgACGCG---UCGCCgUUGUu-----UG-AGUG- -5'
19149 5' -53.9 NC_004684.1 + 59454 0.66 0.797382
Target:  5'- gGUG-UGCGcCGGuCGGCGGCGAugUcCACc -3'
miRNA:   3'- -CACgACGC-GUC-GCCGUUGUUugA-GUG- -5'
19149 5' -53.9 NC_004684.1 + 9037 0.66 0.797382
Target:  5'- aUGCguacGUGguGUGGCAcgacgccaGCcAGCUCACg -3'
miRNA:   3'- cACGa---CGCguCGCCGU--------UGuUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 25995 0.66 0.807143
Target:  5'- -cGCUgGCGCuccuGGCGGCGGcCGggUUCAa -3'
miRNA:   3'- caCGA-CGCG----UCGCCGUU-GUuuGAGUg -5'
19149 5' -53.9 NC_004684.1 + 33257 0.66 0.787442
Target:  5'- cGUGCUGuCGCucaacAGCaccGCGACGAGCaCACa -3'
miRNA:   3'- -CACGAC-GCG-----UCGc--CGUUGUUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 15303 0.66 0.797382
Target:  5'- -gGCUGgcgcgaCGCGGUGGCAACccGCgaagCACu -3'
miRNA:   3'- caCGAC------GCGUCGCCGUUGuuUGa---GUG- -5'
19149 5' -53.9 NC_004684.1 + 7408 0.66 0.760844
Target:  5'- cUGCgGCGCGuGCGGCAagguccgggugcggcACGAGCgccgccagCACa -3'
miRNA:   3'- cACGaCGCGU-CGCCGU---------------UGUUUGa-------GUG- -5'
19149 5' -53.9 NC_004684.1 + 63588 0.66 0.807143
Target:  5'- cUGCgcgGCGCGGCGGUggUu-AC-CGCc -3'
miRNA:   3'- cACGa--CGCGUCGCCGuuGuuUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 29575 0.66 0.756664
Target:  5'- -cGCUGUGUAG-GGCGcgccgugccccACAcACUCACc -3'
miRNA:   3'- caCGACGCGUCgCCGU-----------UGUuUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 25672 0.66 0.806175
Target:  5'- -gGCaggGCGCgaccuacGGCGGCAACGcGCguggCGCa -3'
miRNA:   3'- caCGa--CGCG-------UCGCCGUUGUuUGa---GUG- -5'
19149 5' -53.9 NC_004684.1 + 18961 0.66 0.781397
Target:  5'- aUGCcaGCGCGGUgucgauguccuuguaGGCGGCAAucucggccaGCUCGCg -3'
miRNA:   3'- cACGa-CGCGUCG---------------CCGUUGUU---------UGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 13548 0.66 0.767071
Target:  5'- -aGCUGCGCcuGGCGGCcAUcgGCUacuGCg -3'
miRNA:   3'- caCGACGCG--UCGCCGuUGuuUGAg--UG- -5'
19149 5' -53.9 NC_004684.1 + 43808 0.66 0.756664
Target:  5'- gGUGgUgGCGC-GCGcGCAGCGAGgUCGCc -3'
miRNA:   3'- -CACgA-CGCGuCGC-CGUUGUUUgAGUG- -5'
19149 5' -53.9 NC_004684.1 + 35795 0.66 0.807143
Target:  5'- -cGUgGCGCAGUccccGGCGACGGuggucAUUCACg -3'
miRNA:   3'- caCGaCGCGUCG----CCGUUGUU-----UGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 36877 0.66 0.767071
Target:  5'- aUGCUGguggcCGUGGuCGGCAACcAGCUCGg -3'
miRNA:   3'- cACGAC-----GCGUC-GCCGUUGuUUGAGUg -5'
19149 5' -53.9 NC_004684.1 + 29663 0.66 0.777335
Target:  5'- cGUGCuccUGCGC-GCGGCcgacCAGAC-CGCg -3'
miRNA:   3'- -CACG---ACGCGuCGCCGuu--GUUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 28271 0.66 0.777335
Target:  5'- cUGgUGCGCGaggccGCuGGCGugGuGCUCACg -3'
miRNA:   3'- cACgACGCGU-----CG-CCGUugUuUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 36215 0.66 0.767071
Target:  5'- -aGCUGCGCAGCguGGCcACcgccgAGAC-CGCu -3'
miRNA:   3'- caCGACGCGUCG--CCGuUG-----UUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 46693 0.66 0.777335
Target:  5'- -gGCgGUGCGGUGGCGcgcccuguGCGAGCgCGCc -3'
miRNA:   3'- caCGaCGCGUCGCCGU--------UGUUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 43451 0.66 0.767071
Target:  5'- gGUGCgGCGgGcGCGGCAGCAggUgcgGCg -3'
miRNA:   3'- -CACGaCGCgU-CGCCGUUGUuuGag-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.