miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 5' -53.9 NC_004684.1 + 41267 0.7 0.558171
Target:  5'- cUGgUGUGguGgGGCAACGAcuggaACUCGCc -3'
miRNA:   3'- cACgACGCguCgCCGUUGUU-----UGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 57750 0.71 0.483143
Target:  5'- -aGCUGCGCAGUGaGCGGuCAGGCggucUACg -3'
miRNA:   3'- caCGACGCGUCGC-CGUU-GUUUGa---GUG- -5'
19149 5' -53.9 NC_004684.1 + 67079 0.71 0.492537
Target:  5'- gGUGCggGCGUuggccucGGCGGcCAGCGAACUCu- -3'
miRNA:   3'- -CACGa-CGCG-------UCGCC-GUUGUUUGAGug -5'
19149 5' -53.9 NC_004684.1 + 66715 0.71 0.504131
Target:  5'- -cGCUGCGCGGCgaacucGGUGACGGuCUUGCg -3'
miRNA:   3'- caCGACGCGUCG------CCGUUGUUuGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 53095 0.71 0.504131
Target:  5'- --cCUGCGCGGCGGCcuGCAAggccACaUCACg -3'
miRNA:   3'- cacGACGCGUCGCCGu-UGUU----UG-AGUG- -5'
19149 5' -53.9 NC_004684.1 + 20118 0.71 0.514773
Target:  5'- -cGCUGgGCGGCGGCAcCAAGaacgugcgguucUUCGCc -3'
miRNA:   3'- caCGACgCGUCGCCGUuGUUU------------GAGUG- -5'
19149 5' -53.9 NC_004684.1 + 23431 0.7 0.525504
Target:  5'- gGUGCUGCGCacGGUGGcCGAUcuGCUgGCc -3'
miRNA:   3'- -CACGACGCG--UCGCC-GUUGuuUGAgUG- -5'
19149 5' -53.9 NC_004684.1 + 61492 0.7 0.525504
Target:  5'- -cGCcGCGCAgGCGGCGGC--GCUCGa -3'
miRNA:   3'- caCGaCGCGU-CGCCGUUGuuUGAGUg -5'
19149 5' -53.9 NC_004684.1 + 40706 0.7 0.536319
Target:  5'- -aGCUGgGCGGCGGUGGCcgGGACgaccagCGCg -3'
miRNA:   3'- caCGACgCGUCGCCGUUG--UUUGa-----GUG- -5'
19149 5' -53.9 NC_004684.1 + 20445 0.71 0.462585
Target:  5'- -cGCUGUGCA-CGGCGGCGAagauGCUgCGCa -3'
miRNA:   3'- caCGACGCGUcGCCGUUGUU----UGA-GUG- -5'
19149 5' -53.9 NC_004684.1 + 18131 0.72 0.413312
Target:  5'- cUGCUGCugGGCGGCAAgGAGUUCACg -3'
miRNA:   3'- cACGACGcgUCGCCGUUgUUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 63498 0.73 0.403851
Target:  5'- -aGCUGCGCcugcgccagcagGGCGGCcuGGCGucgcAGCUCGCg -3'
miRNA:   3'- caCGACGCG------------UCGCCG--UUGU----UUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 43487 0.82 0.109782
Target:  5'- gGUGCggcggGCGCAGCGGCAGCAggUgcaGCg -3'
miRNA:   3'- -CACGa----CGCGUCGCCGUUGUuuGag-UG- -5'
19149 5' -53.9 NC_004684.1 + 15762 0.79 0.163164
Target:  5'- -aGCUGCGCAGCGGCAcCua--UCGCg -3'
miRNA:   3'- caCGACGCGUCGCCGUuGuuugAGUG- -5'
19149 5' -53.9 NC_004684.1 + 33483 0.76 0.264544
Target:  5'- -gGCUGCgguggacGCGGCGGCGGCccuguACUCGCg -3'
miRNA:   3'- caCGACG-------CGUCGCCGUUGuu---UGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 44667 0.75 0.293996
Target:  5'- -cGCUGCuGCGGCGGCGcgaugcCGAugUCGCu -3'
miRNA:   3'- caCGACG-CGUCGCCGUu-----GUUugAGUG- -5'
19149 5' -53.9 NC_004684.1 + 51577 0.75 0.293996
Target:  5'- -cGCUGCGCGGCGGCGACcGGgUgGu -3'
miRNA:   3'- caCGACGCGUCGCCGUUGuUUgAgUg -5'
19149 5' -53.9 NC_004684.1 + 34162 0.74 0.350055
Target:  5'- gGUGCUGCuCAcCGGCAcgccCGAGCUCACg -3'
miRNA:   3'- -CACGACGcGUcGCCGUu---GUUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 12286 0.73 0.385345
Target:  5'- cGUGCUGCGCAGCGcGcCAACGGuggaggUACg -3'
miRNA:   3'- -CACGACGCGUCGC-C-GUUGUUuga---GUG- -5'
19149 5' -53.9 NC_004684.1 + 49186 0.73 0.403851
Target:  5'- -gGCgGCgGCGGCGGCGGCcuGCUCGg -3'
miRNA:   3'- caCGaCG-CGUCGCCGUUGuuUGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.