miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 5' -53.9 NC_004684.1 + 15191 1.08 0.001447
Target:  5'- gGUGCUGCGCAGCGGCAACAAACUCACc -3'
miRNA:   3'- -CACGACGCGUCGCCGUUGUUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 43487 0.82 0.109782
Target:  5'- gGUGCggcggGCGCAGCGGCAGCAggUgcaGCg -3'
miRNA:   3'- -CACGa----CGCGUCGCCGUUGUuuGag-UG- -5'
19149 5' -53.9 NC_004684.1 + 15762 0.79 0.163164
Target:  5'- -aGCUGCGCAGCGGCAcCua--UCGCg -3'
miRNA:   3'- caCGACGCGUCGCCGUuGuuugAGUG- -5'
19149 5' -53.9 NC_004684.1 + 38240 0.77 0.220437
Target:  5'- cUGCUGCGCGGCgaacugcgucGGCAccACcAGCUCGCa -3'
miRNA:   3'- cACGACGCGUCG----------CCGU--UGuUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 33483 0.76 0.264544
Target:  5'- -gGCUGCgguggacGCGGCGGCGGCccuguACUCGCg -3'
miRNA:   3'- caCGACG-------CGUCGCCGUUGuu---UGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 44667 0.75 0.293996
Target:  5'- -cGCUGCuGCGGCGGCGcgaugcCGAugUCGCu -3'
miRNA:   3'- caCGACG-CGUCGCCGUu-----GUUugAGUG- -5'
19149 5' -53.9 NC_004684.1 + 51577 0.75 0.293996
Target:  5'- -cGCUGCGCGGCGGCGACcGGgUgGu -3'
miRNA:   3'- caCGACGCGUCGCCGUUGuUUgAgUg -5'
19149 5' -53.9 NC_004684.1 + 20210 0.74 0.325134
Target:  5'- -cGCcGCGCAGCGGCGGCccuGGC-CGCc -3'
miRNA:   3'- caCGaCGCGUCGCCGUUGu--UUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 34162 0.74 0.350055
Target:  5'- gGUGCUGCuCAcCGGCAcgccCGAGCUCACg -3'
miRNA:   3'- -CACGACGcGUcGCCGUu---GUUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 5396 0.73 0.367409
Target:  5'- -cGCgauugUGCGCGGCGGguGCGgguGGCUCAUg -3'
miRNA:   3'- caCG-----ACGCGUCGCCguUGU---UUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 52231 0.73 0.376305
Target:  5'- gGUGCgUG-GCGGCGGCGGCcAGCUgCGCg -3'
miRNA:   3'- -CACG-ACgCGUCGCCGUUGuUUGA-GUG- -5'
19149 5' -53.9 NC_004684.1 + 12286 0.73 0.385345
Target:  5'- cGUGCUGCGCAGCGcGcCAACGGuggaggUACg -3'
miRNA:   3'- -CACGACGCGUCGC-C-GUUGUUuga---GUG- -5'
19149 5' -53.9 NC_004684.1 + 49186 0.73 0.403851
Target:  5'- -gGCgGCgGCGGCGGCGGCcuGCUCGg -3'
miRNA:   3'- caCGaCG-CGUCGCCGUUGuuUGAGUg -5'
19149 5' -53.9 NC_004684.1 + 63498 0.73 0.403851
Target:  5'- -aGCUGCGCcugcgccagcagGGCGGCcuGGCGucgcAGCUCGCg -3'
miRNA:   3'- caCGACGCG------------UCGCCG--UUGU----UUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 18131 0.72 0.413312
Target:  5'- cUGCUGCugGGCGGCAAgGAGUUCACg -3'
miRNA:   3'- cACGACGcgUCGCCGUUgUUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 20445 0.71 0.462585
Target:  5'- -cGCUGUGCA-CGGCGGCGAagauGCUgCGCa -3'
miRNA:   3'- caCGACGCGUcGCCGUUGUU----UGA-GUG- -5'
19149 5' -53.9 NC_004684.1 + 53756 0.71 0.472807
Target:  5'- -cGCagGUGC-GCGGCGGCGAACgugCGCa -3'
miRNA:   3'- caCGa-CGCGuCGCCGUUGUUUGa--GUG- -5'
19149 5' -53.9 NC_004684.1 + 57750 0.71 0.483143
Target:  5'- -aGCUGCGCAGUGaGCGGuCAGGCggucUACg -3'
miRNA:   3'- caCGACGCGUCGC-CGUU-GUUUGa---GUG- -5'
19149 5' -53.9 NC_004684.1 + 67079 0.71 0.492537
Target:  5'- gGUGCggGCGUuggccucGGCGGcCAGCGAACUCu- -3'
miRNA:   3'- -CACGa-CGCG-------UCGCC-GUUGUUUGAGug -5'
19149 5' -53.9 NC_004684.1 + 53095 0.71 0.504131
Target:  5'- --cCUGCGCGGCGGCcuGCAAggccACaUCACg -3'
miRNA:   3'- cacGACGCGUCGCCGu-UGUU----UG-AGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.