miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 15413 1.12 0.001392
Target:  5'- gGCCAGCAUUGUUGACCCCGAACCGACu -3'
miRNA:   3'- -CGGUCGUAACAACUGGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 8079 0.78 0.263497
Target:  5'- uGCCAGCGccaucGACCCCGAcACCGGCc -3'
miRNA:   3'- -CGGUCGUaacaaCUGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9063 0.75 0.354753
Target:  5'- aGCCAGCucacgGUgGACCCgGAcaagACCGACg -3'
miRNA:   3'- -CGGUCGuaa--CAaCUGGGgCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 36683 0.75 0.380792
Target:  5'- cGCCAGCAUcGUUGGCgugCCC--ACCGGCg -3'
miRNA:   3'- -CGGUCGUAaCAACUG---GGGcuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40712 0.74 0.41744
Target:  5'- aCCAGCAggUUGacgaUGGCCCCGAggAUCGGCa -3'
miRNA:   3'- cGGUCGU--AACa---ACUGGGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 11772 0.73 0.456158
Target:  5'- uCCGGUGUgg-UGGCCCCGuggGCCGACc -3'
miRNA:   3'- cGGUCGUAacaACUGGGGCu--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 44192 0.73 0.456158
Target:  5'- cGCCAGCAccucgcgguacUUGUcGACCCaGGGCCGGa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCUGGGgCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 47600 0.73 0.496728
Target:  5'- gGCCAGCAggcccgccaucUUGUcGcCCCCGGcgggcACCGGCa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCuGGGGCU-----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 41451 0.72 0.54957
Target:  5'- cGCCGGUGUcagUGgggcUGACCCCGGcgguGCUGGCc -3'
miRNA:   3'- -CGGUCGUA---ACa---ACUGGGGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40119 0.71 0.560362
Target:  5'- aGCgGGCGcUGgcGGCCUCGGcACCGACc -3'
miRNA:   3'- -CGgUCGUaACaaCUGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 24585 0.71 0.571212
Target:  5'- gGCCAGCgaGUUGggaucaaGGCCCUGGAggcCCGGCa -3'
miRNA:   3'- -CGGUCG--UAACaa-----CUGGGGCUU---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 13407 0.71 0.604026
Target:  5'- aGCCGGacgUGUcGGCCCUGcucACCGACu -3'
miRNA:   3'- -CGGUCguaACAaCUGGGGCu--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 20635 0.71 0.604026
Target:  5'- cGCCAGCGc-GUcgagcUGACCCCaGAGguCCGGCg -3'
miRNA:   3'- -CGGUCGUaaCA-----ACUGGGG-CUU--GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 64192 0.7 0.626037
Target:  5'- cGUCGGCGUUGccgGugUgCCGGAUCGACa -3'
miRNA:   3'- -CGGUCGUAACaa-CugG-GGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 879 0.7 0.626037
Target:  5'- gGCCAGCAcg--UGAuCCCCGcGCCGcGCa -3'
miRNA:   3'- -CGGUCGUaacaACU-GGGGCuUGGC-UG- -5'
19151 3' -53.2 NC_004684.1 + 31076 0.7 0.659069
Target:  5'- aCCGGCgaGUUGUUGGuCCaCCGggUgGACa -3'
miRNA:   3'- cGGUCG--UAACAACU-GG-GGCuuGgCUG- -5'
19151 3' -53.2 NC_004684.1 + 56293 0.7 0.659069
Target:  5'- gGUCGGCGUgcucguUGUUGAgcagguagCCCGAACCGAg -3'
miRNA:   3'- -CGGUCGUA------ACAACUg-------GGGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 20765 0.7 0.659069
Target:  5'- uGCCguccacaccggaGGCGg---UGGCCCCGAagccACCGGCa -3'
miRNA:   3'- -CGG------------UCGUaacaACUGGGGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 1664 0.7 0.670043
Target:  5'- gGCCAGCuc----GACUCCcugGAACCGACg -3'
miRNA:   3'- -CGGUCGuaacaaCUGGGG---CUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9253 0.69 0.680982
Target:  5'- cGCUGGCggUGcucauCCCCGAGCUGGCc -3'
miRNA:   3'- -CGGUCGuaACaacu-GGGGCUUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.