miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 879 0.7 0.626037
Target:  5'- gGCCAGCAcg--UGAuCCCCGcGCCGcGCa -3'
miRNA:   3'- -CGGUCGUaacaACU-GGGGCuUGGC-UG- -5'
19151 3' -53.2 NC_004684.1 + 1597 0.65 0.881192
Target:  5'- cGCCAGCGUgcaggagcagcaGUUccGGCaCCUGcACCGGCg -3'
miRNA:   3'- -CGGUCGUAa-----------CAA--CUG-GGGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 1664 0.7 0.670043
Target:  5'- gGCCAGCuc----GACUCCcugGAACCGACg -3'
miRNA:   3'- -CGGUCGuaacaaCUGGGG---CUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 2579 0.66 0.841971
Target:  5'- gGCCGGUGUgcccGACCcgaCCGAguacGCCGACg -3'
miRNA:   3'- -CGGUCGUAacaaCUGG---GGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 8079 0.78 0.263497
Target:  5'- uGCCAGCGccaucGACCCCGAcACCGGCc -3'
miRNA:   3'- -CGGUCGUaacaaCUGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 8585 0.66 0.854817
Target:  5'- uGCCgAGCAUgaacgcgccggUGGCCUCGAacaagcccggugcACCGGCa -3'
miRNA:   3'- -CGG-UCGUAaca--------ACUGGGGCU-------------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9053 0.67 0.814819
Target:  5'- cGCCAGCAg----GGCCaCCGGGcgcgccaugacCCGGCg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCUU-----------GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9063 0.75 0.354753
Target:  5'- aGCCAGCucacgGUgGACCCgGAcaagACCGACg -3'
miRNA:   3'- -CGGUCGuaa--CAaCUGGGgCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9253 0.69 0.680982
Target:  5'- cGCUGGCggUGcucauCCCCGAGCUGGCc -3'
miRNA:   3'- -CGGUCGuaACaacu-GGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9522 0.66 0.858983
Target:  5'- cGCCAGCucucc-GACCgCGAGCUGGu -3'
miRNA:   3'- -CGGUCGuaacaaCUGGgGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 11374 0.67 0.79574
Target:  5'- uGCCGGUggUGgcguccaucgUGGCCUCGuucacGCCGACc -3'
miRNA:   3'- -CGGUCGuaACa---------ACUGGGGCu----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 11772 0.73 0.456158
Target:  5'- uCCGGUGUgg-UGGCCCCGuggGCCGACc -3'
miRNA:   3'- cGGUCGUAacaACUGGGGCu--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 12048 0.67 0.826813
Target:  5'- aCCAGCAggaggcggcucgccUGGCCgCCGAGCgCGACg -3'
miRNA:   3'- cGGUCGUaaca----------ACUGG-GGCUUG-GCUG- -5'
19151 3' -53.2 NC_004684.1 + 12559 0.67 0.79574
Target:  5'- uGCCAGCGUgcucGUUGACCgCCcGGUCGAa -3'
miRNA:   3'- -CGGUCGUAa---CAACUGG-GGcUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 13012 0.68 0.775977
Target:  5'- uGCCcGCAUggccucGACCCCGcccCCGGCa -3'
miRNA:   3'- -CGGuCGUAacaa--CUGGGGCuu-GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 13407 0.71 0.604026
Target:  5'- aGCCGGacgUGUcGGCCCUGcucACCGACu -3'
miRNA:   3'- -CGGUCguaACAaCUGGGGCu--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 14508 0.69 0.724158
Target:  5'- cGCCGGUGgcacggUGacggUGACCCUGGccuaacugGCCGACc -3'
miRNA:   3'- -CGGUCGUa-----ACa---ACUGGGGCU--------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 14761 0.68 0.755617
Target:  5'- uGCCGGUgaUGgcgacGugCCCGGcACCGACc -3'
miRNA:   3'- -CGGUCGuaACaa---CugGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 15413 1.12 0.001392
Target:  5'- gGCCAGCAUUGUUGACCCCGAACCGACu -3'
miRNA:   3'- -CGGUCGUAACAACUGGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 15707 0.66 0.867137
Target:  5'- aCCGGCAUcGUgcuCCCgGAgacACCGACc -3'
miRNA:   3'- cGGUCGUAaCAacuGGGgCU---UGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.