Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 65805 | 0.68 | 0.775976 |
Target: 5'- uGCCGuGCAccgGgcaggUGACCCgGAggcACCGGCg -3' miRNA: 3'- -CGGU-CGUaa-Ca----ACUGGGgCU---UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 1664 | 0.7 | 0.670043 |
Target: 5'- gGCCAGCuc----GACUCCcugGAACCGACg -3' miRNA: 3'- -CGGUCGuaacaaCUGGGG---CUUGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 9253 | 0.69 | 0.680982 |
Target: 5'- cGCUGGCggUGcucauCCCCGAGCUGGCc -3' miRNA: 3'- -CGGUCGuaACaacu-GGGGCUUGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 21770 | 0.69 | 0.691874 |
Target: 5'- gGCCcGCAUgaugGAUCCCGAugacCCGACc -3' miRNA: 3'- -CGGuCGUAacaaCUGGGGCUu---GGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 14508 | 0.69 | 0.724158 |
Target: 5'- cGCCGGUGgcacggUGacggUGACCCUGGccuaacugGCCGACc -3' miRNA: 3'- -CGGUCGUa-----ACa---ACUGGGGCU--------UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 53055 | 0.68 | 0.745241 |
Target: 5'- cCCAGCAcgGUgGugUCCGAcucgcugguACCGGCg -3' miRNA: 3'- cGGUCGUaaCAaCugGGGCU---------UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 40613 | 0.68 | 0.755617 |
Target: 5'- uCCAGCAccacGUUGAUCaCCGccgcgcGGCCGACg -3' miRNA: 3'- cGGUCGUaa--CAACUGG-GGC------UUGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 66392 | 0.68 | 0.765866 |
Target: 5'- uCCGGCAUgg-UGuccuCCUCGGGCUGGCg -3' miRNA: 3'- cGGUCGUAacaACu---GGGGCUUGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 38494 | 0.68 | 0.775976 |
Target: 5'- cGUCAGCAa----GGCCaCCGAcGCCGACg -3' miRNA: 3'- -CGGUCGUaacaaCUGG-GGCU-UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 20765 | 0.7 | 0.659069 |
Target: 5'- uGCCguccacaccggaGGCGg---UGGCCCCGAagccACCGGCa -3' miRNA: 3'- -CGG------------UCGUaacaACUGGGGCU----UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 64192 | 0.7 | 0.626037 |
Target: 5'- cGUCGGCGUUGccgGugUgCCGGAUCGACa -3' miRNA: 3'- -CGGUCGUAACaa-CugG-GGCUUGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 879 | 0.7 | 0.626037 |
Target: 5'- gGCCAGCAcg--UGAuCCCCGcGCCGcGCa -3' miRNA: 3'- -CGGUCGUaacaACU-GGGGCuUGGC-UG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 8079 | 0.78 | 0.263497 |
Target: 5'- uGCCAGCGccaucGACCCCGAcACCGGCc -3' miRNA: 3'- -CGGUCGUaacaaCUGGGGCU-UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 9063 | 0.75 | 0.354753 |
Target: 5'- aGCCAGCucacgGUgGACCCgGAcaagACCGACg -3' miRNA: 3'- -CGGUCGuaa--CAaCUGGGgCU----UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 11772 | 0.73 | 0.456158 |
Target: 5'- uCCGGUGUgg-UGGCCCCGuggGCCGACc -3' miRNA: 3'- cGGUCGUAacaACUGGGGCu--UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 44192 | 0.73 | 0.456158 |
Target: 5'- cGCCAGCAccucgcgguacUUGUcGACCCaGGGCCGGa -3' miRNA: 3'- -CGGUCGU-----------AACAaCUGGGgCUUGGCUg -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 41451 | 0.72 | 0.54957 |
Target: 5'- cGCCGGUGUcagUGgggcUGACCCCGGcgguGCUGGCc -3' miRNA: 3'- -CGGUCGUA---ACa---ACUGGGGCU----UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 40119 | 0.71 | 0.560362 |
Target: 5'- aGCgGGCGcUGgcGGCCUCGGcACCGACc -3' miRNA: 3'- -CGgUCGUaACaaCUGGGGCU-UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 13407 | 0.71 | 0.604026 |
Target: 5'- aGCCGGacgUGUcGGCCCUGcucACCGACu -3' miRNA: 3'- -CGGUCguaACAaCUGGGGCu--UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 20635 | 0.71 | 0.604026 |
Target: 5'- cGCCAGCGc-GUcgagcUGACCCCaGAGguCCGGCg -3' miRNA: 3'- -CGGUCGUaaCA-----ACUGGGG-CUU--GGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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