miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 5' -51.7 NC_004684.1 + 66343 0.67 0.915265
Target:  5'- gGUGaCGCCGgggCGGGCggccagggCGACG-CGGGu -3'
miRNA:   3'- -CAUaGCGGCa--GCUUGa-------GCUGUuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 65878 0.72 0.65838
Target:  5'- -cGUCGCCGUUGAGCgCGGCGcGCaGGu -3'
miRNA:   3'- caUAGCGGCAGCUUGaGCUGU-UGcCC- -5'
19151 5' -51.7 NC_004684.1 + 62204 0.66 0.931053
Target:  5'- -cGUUGCCGUCcuGGCcaaccagcgccaccUCGACAuCGGGg -3'
miRNA:   3'- caUAGCGGCAGc-UUG--------------AGCUGUuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 61249 0.79 0.300716
Target:  5'- ---cCGCCGUCGAACUgcucaaCGACGACGaGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGA------GCUGUUGC-CC- -5'
19151 5' -51.7 NC_004684.1 + 60840 0.66 0.927151
Target:  5'- --cUCaCCGUCGAugUCcACGGCGGc -3'
miRNA:   3'- cauAGcGGCAGCUugAGcUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 60551 0.67 0.89541
Target:  5'- ---gUGCCGUCGAcacccucgaACUCGAcCAGCuGGu -3'
miRNA:   3'- cauaGCGGCAGCU---------UGAGCU-GUUGcCC- -5'
19151 5' -51.7 NC_004684.1 + 59638 0.76 0.427992
Target:  5'- cUGUCGUCGUCGGA--CGACAGCGGc -3'
miRNA:   3'- cAUAGCGGCAGCUUgaGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 58109 0.74 0.560451
Target:  5'- -cGUCGgCGUCGGgaACUCGACAucggccagcuCGGGg -3'
miRNA:   3'- caUAGCgGCAGCU--UGAGCUGUu---------GCCC- -5'
19151 5' -51.7 NC_004684.1 + 57873 0.66 0.947659
Target:  5'- --cUCGCgGUCGGaagcuggcgcaGCUCGu--ACGGGa -3'
miRNA:   3'- cauAGCGgCAGCU-----------UGAGCuguUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 57296 0.66 0.927151
Target:  5'- uUGUCGCCGguguggcUGAGCaccCGGCGcaccACGGGg -3'
miRNA:   3'- cAUAGCGGCa------GCUUGa--GCUGU----UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 54580 0.68 0.857154
Target:  5'- ---cCGCCGuccUCGGGCgcgUCGuCGGCGGGg -3'
miRNA:   3'- cauaGCGGC---AGCUUG---AGCuGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 53848 0.67 0.919549
Target:  5'- -gAUgGCCGccaggcgcagcuccUCGAACUCGucgGCGcACGGGa -3'
miRNA:   3'- caUAgCGGC--------------AGCUUGAGC---UGU-UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 51928 0.68 0.865297
Target:  5'- ---cCGuuGUCGAGUUCGACGgcgauaccuGCGGGc -3'
miRNA:   3'- cauaGCggCAGCUUGAGCUGU---------UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 51894 0.71 0.722987
Target:  5'- --cUCGUgGUggcacCGAACUCGGCgAACGGGu -3'
miRNA:   3'- cauAGCGgCA-----GCUUGAGCUG-UUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 50811 0.68 0.8732
Target:  5'- ----aGUCGUCGcGCUUGGCccAGCGGGu -3'
miRNA:   3'- cauagCGGCAGCuUGAGCUG--UUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 50593 0.71 0.733508
Target:  5'- ---aUGCCGUCGGG-UCGGCGgucgGCGGGu -3'
miRNA:   3'- cauaGCGGCAGCUUgAGCUGU----UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 49388 0.66 0.937947
Target:  5'- aUGUUGCCGcCGuACUCGGuCAGCGc- -3'
miRNA:   3'- cAUAGCGGCaGCuUGAGCU-GUUGCcc -5'
19151 5' -51.7 NC_004684.1 + 49113 0.67 0.915265
Target:  5'- -gGUCGCCGUCGGcgUCGGCc-UGGa -3'
miRNA:   3'- caUAGCGGCAGCUugAGCUGuuGCCc -5'
19151 5' -51.7 NC_004684.1 + 48940 0.68 0.865297
Target:  5'- --cUCGUCGcCGAACggcacgUCGGCGgGCGGGg -3'
miRNA:   3'- cauAGCGGCaGCUUG------AGCUGU-UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 48569 0.68 0.865297
Target:  5'- ---cUGCgCGcCGAGCUUGACGAUGGa -3'
miRNA:   3'- cauaGCG-GCaGCUUGAGCUGUUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.