miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 5' -51.7 NC_004684.1 + 61249 0.79 0.300716
Target:  5'- ---cCGCCGUCGAACUgcucaaCGACGACGaGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGA------GCUGUUGC-CC- -5'
19151 5' -51.7 NC_004684.1 + 44951 0.67 0.902295
Target:  5'- -gAUCGCCGcCGcGC-CGACGGCGa- -3'
miRNA:   3'- caUAGCGGCaGCuUGaGCUGUUGCcc -5'
19151 5' -51.7 NC_004684.1 + 26716 0.67 0.908915
Target:  5'- -cGUCGCCaccuugcugGcCGAGCgCGACuGGCGGGg -3'
miRNA:   3'- caUAGCGG---------CaGCUUGaGCUG-UUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 57873 0.66 0.947659
Target:  5'- --cUCGCgGUCGGaagcuggcgcaGCUCGu--ACGGGa -3'
miRNA:   3'- cauAGCGgCAGCU-----------UGAGCuguUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 23973 0.76 0.457023
Target:  5'- --cUCGCCGggccUCGggUUCGGCGGCGGc -3'
miRNA:   3'- cauAGCGGC----AGCuuGAGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 58109 0.74 0.560451
Target:  5'- -cGUCGgCGUCGGgaACUCGACAucggccagcuCGGGg -3'
miRNA:   3'- caUAGCgGCAGCU--UGAGCUGUu---------GCCC- -5'
19151 5' -51.7 NC_004684.1 + 17106 0.71 0.701689
Target:  5'- -aGUCGCCGUCGGGCcUGGCGcUGGc -3'
miRNA:   3'- caUAGCGGCAGCUUGaGCUGUuGCCc -5'
19151 5' -51.7 NC_004684.1 + 39412 0.69 0.813123
Target:  5'- ---aCGCCGcCGAACUCcGCAcucuCGGGc -3'
miRNA:   3'- cauaGCGGCaGCUUGAGcUGUu---GCCC- -5'
19151 5' -51.7 NC_004684.1 + 36974 0.69 0.840179
Target:  5'- ---cCGCCGUCGAACagguguugccaCGGCAGCgccGGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGa----------GCUGUUG---CCC- -5'
19151 5' -51.7 NC_004684.1 + 30212 0.67 0.902295
Target:  5'- ---gCGCgCGUCGAuGCUCGGCGcgACGuGGc -3'
miRNA:   3'- cauaGCG-GCAGCU-UGAGCUGU--UGC-CC- -5'
19151 5' -51.7 NC_004684.1 + 51928 0.68 0.865297
Target:  5'- ---cCGuuGUCGAGUUCGACGgcgauaccuGCGGGc -3'
miRNA:   3'- cauaGCggCAGCUUGAGCUGU---------UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 39480 0.69 0.822342
Target:  5'- gGUGUCGCCcagGAACUCGcGCAGgcCGGGc -3'
miRNA:   3'- -CAUAGCGGcagCUUGAGC-UGUU--GCCC- -5'
19151 5' -51.7 NC_004684.1 + 29325 0.78 0.339658
Target:  5'- -cGUCGCCGUUGAGCUucuUGGCcuCGGGg -3'
miRNA:   3'- caUAGCGGCAGCUUGA---GCUGuuGCCC- -5'
19151 5' -51.7 NC_004684.1 + 2580 0.68 0.880858
Target:  5'- -cAUgGCCcaCGAACUCGACAGCa-- -3'
miRNA:   3'- caUAgCGGcaGCUUGAGCUGUUGccc -5'
19151 5' -51.7 NC_004684.1 + 59638 0.76 0.427992
Target:  5'- cUGUCGUCGUCGGA--CGACAGCGGc -3'
miRNA:   3'- cAUAGCGGCAGCUUgaGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 37930 0.69 0.822342
Target:  5'- gGUcgCGCaccagGUCGAugUCGAaccggucgccCAGCGGGu -3'
miRNA:   3'- -CAuaGCGg----CAGCUugAGCU----------GUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 43428 0.68 0.880858
Target:  5'- ----aGCCGUcCGGguuguacagGCUCGGCAGgCGGGu -3'
miRNA:   3'- cauagCGGCA-GCU---------UGAGCUGUU-GCCC- -5'
19151 5' -51.7 NC_004684.1 + 11234 0.67 0.908915
Target:  5'- -cGUCGCCGUCG---UCGGCca-GGGc -3'
miRNA:   3'- caUAGCGGCAGCuugAGCUGuugCCC- -5'
19151 5' -51.7 NC_004684.1 + 36140 0.76 0.447226
Target:  5'- gGUGUCccggagGCCGUCGAACacaUCGGCAAUGGc -3'
miRNA:   3'- -CAUAG------CGGCAGCUUG---AGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 20813 0.74 0.582029
Target:  5'- ---cCGCCGUCGAGCgCGAC--UGGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGaGCUGuuGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.