miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19200 5' -62.6 NC_004684.1 + 35165 1.07 0.000424
Target:  5'- aACUCGGUGGCCGAGCCGGAACCGGGUg -3'
miRNA:   3'- -UGAGCCACCGGCUCGGCCUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 30571 0.77 0.069419
Target:  5'- cCUCGGUGGUgGAGCUGGu-CUGGGUg -3'
miRNA:   3'- uGAGCCACCGgCUCGGCCuuGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 62975 0.76 0.079443
Target:  5'- uGCUCGGUGGUgCGcacguGGCCGGuGGCCGGGa -3'
miRNA:   3'- -UGAGCCACCG-GC-----UCGGCC-UUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 4038 0.76 0.086108
Target:  5'- cGCUCGGUGcGCUGGGCgGucACCGGGg -3'
miRNA:   3'- -UGAGCCAC-CGGCUCGgCcuUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 49205 0.74 0.118449
Target:  5'- uGCUCGGUcGGCC-AGUCGGucgguGCCGGGc -3'
miRNA:   3'- -UGAGCCA-CCGGcUCGGCCu----UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 19309 0.74 0.118449
Target:  5'- uGCUUGcccGGCCGAcGCCGGAACCGGuGg -3'
miRNA:   3'- -UGAGCca-CCGGCU-CGGCCUUGGCC-Ca -5'
19200 5' -62.6 NC_004684.1 + 57894 0.74 0.128152
Target:  5'- gGCU-GGUGGCCGGGCUgaaGGuGGCCGGGc -3'
miRNA:   3'- -UGAgCCACCGGCUCGG---CC-UUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 49644 0.73 0.131546
Target:  5'- gACgaggCGGuUGGCCGcGCCGGAuuCCGGGc -3'
miRNA:   3'- -UGa---GCC-ACCGGCuCGGCCUu-GGCCCa -5'
19200 5' -62.6 NC_004684.1 + 38757 0.73 0.131546
Target:  5'- cGCUCGGUGaGCauugGAccagcaCCGGAACCGGGUa -3'
miRNA:   3'- -UGAGCCAC-CGg---CUc-----GGCCUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 361 0.72 0.157715
Target:  5'- aGCUCGGUGGCCaGGCCaucguGGuGCCGGu- -3'
miRNA:   3'- -UGAGCCACCGGcUCGG-----CCuUGGCCca -5'
19200 5' -62.6 NC_004684.1 + 36902 0.72 0.174705
Target:  5'- aGCUCGGacUGGCCGguggcaucgcccGGUCGaGGCCGGGUg -3'
miRNA:   3'- -UGAGCC--ACCGGC------------UCGGCcUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 4045 0.71 0.20223
Target:  5'- --aCGGUGGCCuaccggccaucGCCGGGugACCGGGUg -3'
miRNA:   3'- ugaGCCACCGGcu---------CGGCCU--UGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 54418 0.7 0.21362
Target:  5'- cGCUCGGUGuugccugccGCCGcgucGGCgGGAgcACCGGGg -3'
miRNA:   3'- -UGAGCCAC---------CGGC----UCGgCCU--UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 1433 0.7 0.240975
Target:  5'- gGCcaaGGUccaGGCCGAGCUGGAccaccuggucgagACCGGGc -3'
miRNA:   3'- -UGag-CCA---CCGGCUCGGCCU-------------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 4183 0.7 0.241562
Target:  5'- cGC-CGGUGGCCGAGaagaUGGGGCCGuucGGc -3'
miRNA:   3'- -UGaGCCACCGGCUCg---GCCUUGGC---CCa -5'
19200 5' -62.6 NC_004684.1 + 18374 0.69 0.272484
Target:  5'- cGC-CGGUGGCCGAucuGUucagCGGggUCGGGc -3'
miRNA:   3'- -UGaGCCACCGGCU---CG----GCCuuGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 43493 0.68 0.29252
Target:  5'- uGCUCGGU---CGAGCCGGGGCgguCGGGa -3'
miRNA:   3'- -UGAGCCAccgGCUCGGCCUUG---GCCCa -5'
19200 5' -62.6 NC_004684.1 + 49298 0.68 0.29252
Target:  5'- cGCUCGGUGGCCuuGCCGu--CCaGGa -3'
miRNA:   3'- -UGAGCCACCGGcuCGGCcuuGGcCCa -5'
19200 5' -62.6 NC_004684.1 + 3645 0.68 0.29945
Target:  5'- aACUa-GUGGCCGc-CCGGuGCCGGGUc -3'
miRNA:   3'- -UGAgcCACCGGCucGGCCuUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 5923 0.68 0.306506
Target:  5'- gAC-CGGcUGGCCGcGCUGGccACCGGGc -3'
miRNA:   3'- -UGaGCC-ACCGGCuCGGCCu-UGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.