miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19200 5' -62.6 NC_004684.1 + 361 0.72 0.157715
Target:  5'- aGCUCGGUGGCCaGGCCaucguGGuGCCGGu- -3'
miRNA:   3'- -UGAGCCACCGGcUCGG-----CCuUGGCCca -5'
19200 5' -62.6 NC_004684.1 + 1433 0.7 0.240975
Target:  5'- gGCcaaGGUccaGGCCGAGCUGGAccaccuggucgagACCGGGc -3'
miRNA:   3'- -UGag-CCA---CCGGCUCGGCCU-------------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 1739 0.67 0.335996
Target:  5'- uACUCGGgaccgGGUa-GGUCGGGACCGGa- -3'
miRNA:   3'- -UGAGCCa----CCGgcUCGGCCUUGGCCca -5'
19200 5' -62.6 NC_004684.1 + 2686 0.67 0.364263
Target:  5'- cGC-CGGgcaccgcauccccGGCCuGGCCGGuGCCGGGg -3'
miRNA:   3'- -UGaGCCa------------CCGGcUCGGCCuUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 3645 0.68 0.29945
Target:  5'- aACUa-GUGGCCGc-CCGGuGCCGGGUc -3'
miRNA:   3'- -UGAgcCACCGGCucGGCCuUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 4038 0.76 0.086108
Target:  5'- cGCUCGGUGcGCUGGGCgGucACCGGGg -3'
miRNA:   3'- -UGAGCCAC-CGGCUCGgCcuUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 4045 0.71 0.20223
Target:  5'- --aCGGUGGCCuaccggccaucGCCGGGugACCGGGUg -3'
miRNA:   3'- ugaGCCACCGGcu---------CGGCCU--UGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 4183 0.7 0.241562
Target:  5'- cGC-CGGUGGCCGAGaagaUGGGGCCGuucGGc -3'
miRNA:   3'- -UGaGCCACCGGCUCg---GCCUUGGC---CCa -5'
19200 5' -62.6 NC_004684.1 + 5923 0.68 0.306506
Target:  5'- gAC-CGGcUGGCCGcGCUGGccACCGGGc -3'
miRNA:   3'- -UGaGCC-ACCGGCuCGGCCu-UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 7637 0.67 0.3515
Target:  5'- aGCUCGccGUGG-CGGGCgUGGuGACCGGGUc -3'
miRNA:   3'- -UGAGC--CACCgGCUCG-GCC-UUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 9541 0.67 0.367504
Target:  5'- aGCU-GGUGcGCCG-GuuGGAGCCGGu- -3'
miRNA:   3'- -UGAgCCAC-CGGCuCggCCUUGGCCca -5'
19200 5' -62.6 NC_004684.1 + 9849 0.66 0.392433
Target:  5'- aGCUCGGcGGUCGcGCUcuGGAGgCGGGc -3'
miRNA:   3'- -UGAGCCaCCGGCuCGG--CCUUgGCCCa -5'
19200 5' -62.6 NC_004684.1 + 15090 0.66 0.424653
Target:  5'- gGCgCGGUGGCCGcccuggaGGCCGaccuugccgucACCGGGa -3'
miRNA:   3'- -UGaGCCACCGGC-------UCGGCcu---------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 15314 0.66 0.418437
Target:  5'- gGC-CGGUGGCaugGAGCgGGcguucaaggccGCCGGGUu -3'
miRNA:   3'- -UGaGCCACCGg--CUCGgCCu----------UGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 15582 0.67 0.343685
Target:  5'- aGCgCGcGcGGCCuGGCCGuGGACCGGGa -3'
miRNA:   3'- -UGaGC-CaCCGGcUCGGC-CUUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 18374 0.69 0.272484
Target:  5'- cGC-CGGUGGCCGAucuGUucagCGGggUCGGGc -3'
miRNA:   3'- -UGaGCCACCGGCU---CG----GCCuuGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 18839 0.67 0.359439
Target:  5'- aACUCGcaggucgGGUCGuGGUCGGuGACCGGGUg -3'
miRNA:   3'- -UGAGCca-----CCGGC-UCGGCC-UUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 19309 0.74 0.118449
Target:  5'- uGCUUGcccGGCCGAcGCCGGAACCGGuGg -3'
miRNA:   3'- -UGAGCca-CCGGCU-CGGCCUUGGCC-Ca -5'
19200 5' -62.6 NC_004684.1 + 25188 0.66 0.409653
Target:  5'- gACcUGGuUGGCCaGGcGCUGGcACCGGGUg -3'
miRNA:   3'- -UGaGCC-ACCGG-CU-CGGCCuUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 25564 0.66 0.409653
Target:  5'- cGCgUCGGUGGCCaGcGCCu---CCGGGUg -3'
miRNA:   3'- -UG-AGCCACCGG-CuCGGccuuGGCCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.