miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19200 5' -62.6 NC_004684.1 + 35165 1.07 0.000424
Target:  5'- aACUCGGUGGCCGAGCCGGAACCGGGUg -3'
miRNA:   3'- -UGAGCCACCGGCUCGGCCUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 18839 0.67 0.359439
Target:  5'- aACUCGcaggucgGGUCGuGGUCGGuGACCGGGUg -3'
miRNA:   3'- -UGAGCca-----CCGGC-UCGGCC-UUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 2686 0.67 0.364263
Target:  5'- cGC-CGGgcaccgcauccccGGCCuGGCCGGuGCCGGGg -3'
miRNA:   3'- -UGaGCCa------------CCGGcUCGGCCuUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 9541 0.67 0.367504
Target:  5'- aGCU-GGUGcGCCG-GuuGGAGCCGGu- -3'
miRNA:   3'- -UGAgCCAC-CGGCuCggCCUUGGCCca -5'
19200 5' -62.6 NC_004684.1 + 32762 0.66 0.392433
Target:  5'- gACcUGGUGGCgUGAGCau-GACCGGGUg -3'
miRNA:   3'- -UGaGCCACCG-GCUCGgccUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 55547 0.66 0.400984
Target:  5'- aACUCGcGccgcUGGCCGccguGGcCCGGuGGCCGGGg -3'
miRNA:   3'- -UGAGC-C----ACCGGC----UC-GGCC-UUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 25188 0.66 0.409653
Target:  5'- gACcUGGuUGGCCaGGcGCUGGcACCGGGUg -3'
miRNA:   3'- -UGaGCC-ACCGG-CU-CGGCCuUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 54214 0.66 0.413152
Target:  5'- uGCUCGG-GGCCGAgGUCGGccagcagcuguuccaGggcaccgcGCCGGGa -3'
miRNA:   3'- -UGAGCCaCCGGCU-CGGCC---------------U--------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 15090 0.66 0.424653
Target:  5'- gGCgCGGUGGCCGcccuggaGGCCGaccuugccgucACCGGGa -3'
miRNA:   3'- -UGaGCCACCGGC-------UCGGCcu---------UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 55921 0.67 0.343685
Target:  5'- aGCU-GGUGGCCaAGgUGGA-CCGGGg -3'
miRNA:   3'- -UGAgCCACCGGcUCgGCCUuGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 35396 0.68 0.306506
Target:  5'- aACcUGGUGGCCggauGAGCCgccgaGGAGCgCGGGa -3'
miRNA:   3'- -UGaGCCACCGG----CUCGG-----CCUUG-GCCCa -5'
19200 5' -62.6 NC_004684.1 + 28074 0.68 0.306506
Target:  5'- --gCGGUguGGCCGGGCCGccgcgcGAcccgcACCGGGUg -3'
miRNA:   3'- ugaGCCA--CCGGCUCGGC------CU-----UGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 62975 0.76 0.079443
Target:  5'- uGCUCGGUGGUgCGcacguGGCCGGuGGCCGGGa -3'
miRNA:   3'- -UGAGCCACCG-GC-----UCGGCC-UUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 49205 0.74 0.118449
Target:  5'- uGCUCGGUcGGCC-AGUCGGucgguGCCGGGc -3'
miRNA:   3'- -UGAGCCA-CCGGcUCGGCCu----UGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 57894 0.74 0.128152
Target:  5'- gGCU-GGUGGCCGGGCUgaaGGuGGCCGGGc -3'
miRNA:   3'- -UGAgCCACCGGCUCGG---CC-UUGGCCCa -5'
19200 5' -62.6 NC_004684.1 + 38757 0.73 0.131546
Target:  5'- cGCUCGGUGaGCauugGAccagcaCCGGAACCGGGUa -3'
miRNA:   3'- -UGAGCCAC-CGg---CUc-----GGCCUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 36902 0.72 0.174705
Target:  5'- aGCUCGGacUGGCCGguggcaucgcccGGUCGaGGCCGGGUg -3'
miRNA:   3'- -UGAGCC--ACCGGC------------UCGGCcUUGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 4045 0.71 0.20223
Target:  5'- --aCGGUGGCCuaccggccaucGCCGGGugACCGGGUg -3'
miRNA:   3'- ugaGCCACCGGcu---------CGGCCU--UGGCCCA- -5'
19200 5' -62.6 NC_004684.1 + 49298 0.68 0.29252
Target:  5'- cGCUCGGUGGCCuuGCCGu--CCaGGa -3'
miRNA:   3'- -UGAGCCACCGGcuCGGCcuuGGcCCa -5'
19200 5' -62.6 NC_004684.1 + 5923 0.68 0.306506
Target:  5'- gAC-CGGcUGGCCGcGCUGGccACCGGGc -3'
miRNA:   3'- -UGaGCC-ACCGGCuCGGCCu-UGGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.