miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 3' -53.8 NC_004684.1 + 14811 0.69 0.699829
Target:  5'- gCUGUccaCCGGACUGUGgGGCG-CGCcguggUGCg -3'
miRNA:   3'- -GACA---GGCUUGACGCgUUGCaGCG-----ACG- -5'
19202 3' -53.8 NC_004684.1 + 63789 0.68 0.721169
Target:  5'- gUGUUCGGcgGCccagUGCGCGACGUacuccacgucccCGCUGUg -3'
miRNA:   3'- gACAGGCU--UG----ACGCGUUGCA------------GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 34472 0.68 0.731713
Target:  5'- -gGUCaUGGuCUGUGCAGCGUCGCcgagGUc -3'
miRNA:   3'- gaCAG-GCUuGACGCGUUGCAGCGa---CG- -5'
19202 3' -53.8 NC_004684.1 + 63831 0.68 0.742159
Target:  5'- -gGUgCGGAUgGCGCGGCGcaCGCUGUc -3'
miRNA:   3'- gaCAgGCUUGaCGCGUUGCa-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 14738 0.68 0.742159
Target:  5'- -gGUCCGAGgaUGCGgGAcCGUCGCgGUu -3'
miRNA:   3'- gaCAGGCUUg-ACGCgUU-GCAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 25604 0.68 0.752495
Target:  5'- gUGggacgCCGGGCacaUGCGC-GCGaCGCUGCc -3'
miRNA:   3'- gACa----GGCUUG---ACGCGuUGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 12282 0.68 0.752495
Target:  5'- -gGcCCGuGCUGCGCAGCG-CGCcaacgGUg -3'
miRNA:   3'- gaCaGGCuUGACGCGUUGCaGCGa----CG- -5'
19202 3' -53.8 NC_004684.1 + 57097 0.68 0.752495
Target:  5'- -gGUgCGGGCgaccucugGCGCGacaccgGCGUCGCUGg -3'
miRNA:   3'- gaCAgGCUUGa-------CGCGU------UGCAGCGACg -5'
19202 3' -53.8 NC_004684.1 + 8016 0.68 0.76271
Target:  5'- -gGUaggCGAGCUGCGUuauuACGUCgGCUGg -3'
miRNA:   3'- gaCAg--GCUUGACGCGu---UGCAG-CGACg -5'
19202 3' -53.8 NC_004684.1 + 56454 0.68 0.76271
Target:  5'- aUGUCgcggcUGAGCaUGCGCc-CGUCGCUGg -3'
miRNA:   3'- gACAG-----GCUUG-ACGCGuuGCAGCGACg -5'
19202 3' -53.8 NC_004684.1 + 38230 0.67 0.772792
Target:  5'- -gGUUCGGgaacuGCUGCGCGGCGaa-CUGCg -3'
miRNA:   3'- gaCAGGCU-----UGACGCGUUGCagcGACG- -5'
19202 3' -53.8 NC_004684.1 + 50783 0.67 0.772792
Target:  5'- aUGUCCGcGCggucggUGCGCAACaugaaGUCGUcGCg -3'
miRNA:   3'- gACAGGCuUG------ACGCGUUG-----CAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 23763 0.67 0.782731
Target:  5'- -aGUUCGGGCcgugggGCGCGGCGUUGg-GCg -3'
miRNA:   3'- gaCAGGCUUGa-----CGCGUUGCAGCgaCG- -5'
19202 3' -53.8 NC_004684.1 + 5604 0.67 0.782731
Target:  5'- -cGgggCCGAGCUggcGCGCAugGU-GCUGg -3'
miRNA:   3'- gaCa--GGCUUGA---CGCGUugCAgCGACg -5'
19202 3' -53.8 NC_004684.1 + 50006 0.67 0.782731
Target:  5'- uCUGaCCGggUgUGCGCAcCGUCgGCgGCa -3'
miRNA:   3'- -GACaGGCuuG-ACGCGUuGCAG-CGaCG- -5'
19202 3' -53.8 NC_004684.1 + 51556 0.67 0.792516
Target:  5'- uUGU-CGcuCUGCGCcaguGCG-CGCUGCg -3'
miRNA:   3'- gACAgGCuuGACGCGu---UGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 7052 0.67 0.802135
Target:  5'- gCUGgCCGAAC-GCGCggUGaUCGC-GCu -3'
miRNA:   3'- -GACaGGCUUGaCGCGuuGC-AGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 37082 0.67 0.811579
Target:  5'- cCUGUUCGcGgUGCGCGAU---GCUGCg -3'
miRNA:   3'- -GACAGGCuUgACGCGUUGcagCGACG- -5'
19202 3' -53.8 NC_004684.1 + 11831 0.67 0.811579
Target:  5'- gCUGUCCGGcgACUgGCGCGACuUCG--GCa -3'
miRNA:   3'- -GACAGGCU--UGA-CGCGUUGcAGCgaCG- -5'
19202 3' -53.8 NC_004684.1 + 35147 0.66 0.819919
Target:  5'- -gGUCCGAc--GCGCAguagaucGCGcCGCUGUc -3'
miRNA:   3'- gaCAGGCUugaCGCGU-------UGCaGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.