miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 27843 0.7 0.34266
Target:  5'- uGGGCACCGaGCGC-GCUGUGCacgcagGAGUGc -3'
miRNA:   3'- -CUCGUGGC-CGCGaUGACGUGg-----CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 7788 0.7 0.34266
Target:  5'- cGAGCAUUGGUGCgcgggaUGUgACCGGGUGg -3'
miRNA:   3'- -CUCGUGGCCGCGaug---ACG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 5943 0.7 0.350768
Target:  5'- cGAGCACCGGCgGCgagACaaUGCcGCCG-GUGu -3'
miRNA:   3'- -CUCGUGGCCG-CGa--UG--ACG-UGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 16344 0.7 0.359011
Target:  5'- gGAGCgGCUGGCGCUggccgacaaGCUgGCGgCCGAGUa -3'
miRNA:   3'- -CUCG-UGGCCGCGA---------UGA-CGU-GGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 11591 0.7 0.359011
Target:  5'- cAGCccGCCGGUGCgccuggACgacgGCACCGAGcUGg -3'
miRNA:   3'- cUCG--UGGCCGCGa-----UGa---CGUGGCUC-AC- -5'
19202 5' -58.6 NC_004684.1 + 53637 0.69 0.367388
Target:  5'- gGAGCGCCaGGcCGUUGa-GCACCGAgGUGg -3'
miRNA:   3'- -CUCGUGG-CC-GCGAUgaCGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 15079 0.69 0.393317
Target:  5'- -cGCACC-GCGCaGCUGCGCgCGAuGUGu -3'
miRNA:   3'- cuCGUGGcCGCGaUGACGUG-GCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 51565 0.69 0.393317
Target:  5'- -uGCGCCagugcGCGCUGCgcggcgGCgACCGGGUGg -3'
miRNA:   3'- cuCGUGGc----CGCGAUGa-----CG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 39036 0.69 0.393317
Target:  5'- cGGC-UCGGCGguguccaUugUGCGCCGGGUGg -3'
miRNA:   3'- cUCGuGGCCGCg------AugACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 24768 0.69 0.393317
Target:  5'- cAGCACCGGCgGCgGCgggggagGUGCCGGGUc -3'
miRNA:   3'- cUCGUGGCCG-CGaUGa------CGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 15445 0.69 0.402219
Target:  5'- uGGaGCCGGUGCUGCgacguaagUGCGUCGAGUGg -3'
miRNA:   3'- cUCgUGGCCGCGAUG--------ACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 21059 0.69 0.411249
Target:  5'- cGGGUGCCGGUGCUGaccggGCACCuGGGc- -3'
miRNA:   3'- -CUCGUGGCCGCGAUga---CGUGG-CUCac -5'
19202 5' -58.6 NC_004684.1 + 28084 0.69 0.411249
Target:  5'- cGGGcCGCC-GCGCgACccGCACCGGGUGg -3'
miRNA:   3'- -CUC-GUGGcCGCGaUGa-CGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 6773 0.69 0.411249
Target:  5'- -cGCAUgGGCGacg-UGCGCCGGGUGa -3'
miRNA:   3'- cuCGUGgCCGCgaugACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 57131 0.68 0.419482
Target:  5'- cAGCACUGGCGCgGCUGguUCGccuccauggcggcGGUGg -3'
miRNA:   3'- cUCGUGGCCGCGaUGACguGGC-------------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 20250 0.68 0.420403
Target:  5'- uGGGCACCGGgGCcGCcuacGCcACCGAGg- -3'
miRNA:   3'- -CUCGUGGCCgCGaUGa---CG-UGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 41267 0.68 0.439075
Target:  5'- aGGUGCUGGUGCggucggACaGCGCCGAGg- -3'
miRNA:   3'- cUCGUGGCCGCGa-----UGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 61537 0.68 0.439075
Target:  5'- aGGCGCUGGCGUgccGCUGguugguCCGGGUGc -3'
miRNA:   3'- cUCGUGGCCGCGa--UGACgu----GGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 28719 0.68 0.439075
Target:  5'- aGGCuuuCUGGCGCgucUGCgGCACCGAcGUGc -3'
miRNA:   3'- cUCGu--GGCCGCG---AUGaCGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 1978 0.68 0.440021
Target:  5'- cAGCGCCuGGCGCgcgaaccgcguucugGCaGCGCCuGGGUGg -3'
miRNA:   3'- cUCGUGG-CCGCGa--------------UGaCGUGG-CUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.