miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 626 0.76 0.146939
Target:  5'- cGAGUACC-GCGCcgaggucgccggggUGCUGUACCGGGUGg -3'
miRNA:   3'- -CUCGUGGcCGCG--------------AUGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 17364 0.68 0.448587
Target:  5'- aGGCACCGGCcacGCUGCcGCCGAcgGUGc -3'
miRNA:   3'- cUCGUGGCCGcgaUGACG-UGGCU--CAC- -5'
19202 5' -58.6 NC_004684.1 + 30629 0.68 0.467945
Target:  5'- cGGCACCgGGCGCggcccuggcgGCgucaGCGCCGGGa- -3'
miRNA:   3'- cUCGUGG-CCGCGa---------UGa---CGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 47632 0.66 0.59151
Target:  5'- cGGGCACCGGCaggccgcgcaGgUACUGCAcgcuCCaGGUGc -3'
miRNA:   3'- -CUCGUGGCCG----------CgAUGACGU----GGcUCAC- -5'
19202 5' -58.6 NC_004684.1 + 35089 0.72 0.275832
Target:  5'- -uGCACCGGCGUcagGCacaGCGCCGAGc- -3'
miRNA:   3'- cuCGUGGCCGCGa--UGa--CGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 31072 0.7 0.319155
Target:  5'- cGGCACCGGCGagUugUuggucCACCGGGUGg -3'
miRNA:   3'- cUCGUGGCCGCg-AugAc----GUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 7788 0.7 0.34266
Target:  5'- cGAGCAUUGGUGCgcgggaUGUgACCGGGUGg -3'
miRNA:   3'- -CUCGUGGCCGCGaug---ACG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 5943 0.7 0.350768
Target:  5'- cGAGCACCGGCgGCgagACaaUGCcGCCG-GUGu -3'
miRNA:   3'- -CUCGUGGCCG-CGa--UG--ACG-UGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 24768 0.69 0.393317
Target:  5'- cAGCACCGGCgGCgGCgggggagGUGCCGGGUc -3'
miRNA:   3'- cUCGUGGCCG-CGaUGa------CGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 1978 0.68 0.440021
Target:  5'- cAGCGCCuGGCGCgcgaaccgcguucugGCaGCGCCuGGGUGg -3'
miRNA:   3'- cUCGUGG-CCGCGa--------------UGaCGUGG-CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 6773 0.69 0.411249
Target:  5'- -cGCAUgGGCGacg-UGCGCCGGGUGa -3'
miRNA:   3'- cuCGUGgCCGCgaugACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 15079 0.69 0.393317
Target:  5'- -cGCACC-GCGCaGCUGCGCgCGAuGUGu -3'
miRNA:   3'- cuCGUGGcCGCGaUGACGUG-GCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 42383 0.75 0.16052
Target:  5'- -uGCACCGGCGCUGagcGCgACCGGGUu -3'
miRNA:   3'- cuCGUGGCCGCGAUga-CG-UGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 20250 0.68 0.420403
Target:  5'- uGGGCACCGGgGCcGCcuacGCcACCGAGg- -3'
miRNA:   3'- -CUCGUGGCCgCGaUGa---CG-UGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 28089 0.74 0.198227
Target:  5'- gGGGCGCUcguuaGGCGa-GCUGCACCGAGUc -3'
miRNA:   3'- -CUCGUGG-----CCGCgaUGACGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 53637 0.69 0.367388
Target:  5'- gGAGCGCCaGGcCGUUGa-GCACCGAgGUGg -3'
miRNA:   3'- -CUCGUGG-CC-GCGAUgaCGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 41267 0.68 0.439075
Target:  5'- aGGUGCUGGUGCggucggACaGCGCCGAGg- -3'
miRNA:   3'- cUCGUGGCCGCGa-----UGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 67153 0.68 0.458212
Target:  5'- cAGC-UCGGUGUUACcGCGCCGGGg- -3'
miRNA:   3'- cUCGuGGCCGCGAUGaCGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 11960 0.73 0.219838
Target:  5'- aGAcCACCGGCGC-AC-GCGCUGGGUGg -3'
miRNA:   3'- -CUcGUGGCCGCGaUGaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 58768 0.7 0.326853
Target:  5'- cGAGgAUCGGCGgUGCcggUGCACCGGGc- -3'
miRNA:   3'- -CUCgUGGCCGCgAUG---ACGUGGCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.