miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19209 3' -59.5 NC_004684.1 + 66574 0.7 0.295529
Target:  5'- -gUGGUguccauGCGGGCCGCcACGGCGa -3'
miRNA:   3'- auGCCGagaau-CGCCCGGCG-UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 66507 0.75 0.136234
Target:  5'- gGCGGC-CUc-GCGGGCCGCcuuCAGCGc -3'
miRNA:   3'- aUGCCGaGAauCGCCCGGCGu--GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 64931 0.66 0.495224
Target:  5'- gUACGGCacgCcgAGCuGGCCGCccaGGCGg -3'
miRNA:   3'- -AUGCCGa--GaaUCGcCCGGCGug-UCGC- -5'
19209 3' -59.5 NC_004684.1 + 63228 0.66 0.485239
Target:  5'- gGCGGCUCguugccgGGCGucGGCCcgaGCAGCu -3'
miRNA:   3'- aUGCCGAGaa-----UCGC--CCGGcg-UGUCGc -5'
19209 3' -59.5 NC_004684.1 + 63154 0.74 0.164315
Target:  5'- gUGCGGCUCcu-GCGcGCCGCGCAGgCGc -3'
miRNA:   3'- -AUGCCGAGaauCGCcCGGCGUGUC-GC- -5'
19209 3' -59.5 NC_004684.1 + 61338 0.67 0.446313
Target:  5'- cGCGGCguggUUggucAGCuGGGCCGCGaGGCGc -3'
miRNA:   3'- aUGCCGa---GAa---UCG-CCCGGCGUgUCGC- -5'
19209 3' -59.5 NC_004684.1 + 60046 0.68 0.409191
Target:  5'- cACGGCgcgCaccGGCGGGuuGCACAcCGa -3'
miRNA:   3'- aUGCCGa--Gaa-UCGCCCggCGUGUcGC- -5'
19209 3' -59.5 NC_004684.1 + 59132 0.68 0.409191
Target:  5'- cGCGGCgcacgUGGCGGGaCUGCAuguuguCGGCGc -3'
miRNA:   3'- aUGCCGaga--AUCGCCC-GGCGU------GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 58620 0.66 0.536033
Target:  5'- gACGGCcCgUGGCGGcugguGCCGCGCugGGCc -3'
miRNA:   3'- aUGCCGaGaAUCGCC-----CGGCGUG--UCGc -5'
19209 3' -59.5 NC_004684.1 + 54307 0.66 0.492219
Target:  5'- -uCGGCcccCUUGGCggcugacauuccgaGGGCauaGCACAGCGc -3'
miRNA:   3'- auGCCGa--GAAUCG--------------CCCGg--CGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 52917 0.66 0.536033
Target:  5'- cACGGC----GGCGuGGCCGCAUuccaGGCa -3'
miRNA:   3'- aUGCCGagaaUCGC-CCGGCGUG----UCGc -5'
19209 3' -59.5 NC_004684.1 + 51321 0.67 0.475351
Target:  5'- -uCGGCUCaccGGCGGGCCaCGCuuGCu -3'
miRNA:   3'- auGCCGAGaa-UCGCCCGGcGUGu-CGc -5'
19209 3' -59.5 NC_004684.1 + 49168 0.66 0.505301
Target:  5'- gUACGGCgcagUCUcGGCGgcGGCgGCGgCGGCGg -3'
miRNA:   3'- -AUGCCG----AGAaUCGC--CCGgCGU-GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 49058 0.66 0.505301
Target:  5'- -uCGGCUCc--GgGGGCgGCAcCGGCGu -3'
miRNA:   3'- auGCCGAGaauCgCCCGgCGU-GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 47944 0.66 0.505301
Target:  5'- --aGGC-CUUGGUGGcGUCGgCACGGCu -3'
miRNA:   3'- augCCGaGAAUCGCC-CGGC-GUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 47175 0.66 0.536033
Target:  5'- aGCGGC----GGCcaGGGCCGCcgcugcGCGGCGa -3'
miRNA:   3'- aUGCCGagaaUCG--CCCGGCG------UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 46305 0.66 0.525711
Target:  5'- uUGCGGCgCUUGGCGuGC-GC-CAGCGu -3'
miRNA:   3'- -AUGCCGaGAAUCGCcCGgCGuGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 45834 0.67 0.455885
Target:  5'- gACGGC-CUcGGCGGucauGCCGCGCucguugauGGCGu -3'
miRNA:   3'- aUGCCGaGAaUCGCC----CGGCGUG--------UCGC- -5'
19209 3' -59.5 NC_004684.1 + 43804 0.68 0.391365
Target:  5'- uUACGGU----GGUGGcGCgCGCGCAGCGa -3'
miRNA:   3'- -AUGCCGagaaUCGCC-CG-GCGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 43441 0.75 0.129059
Target:  5'- gUACaGGCUCggcaGGCGGguGCCGCGCAGCu -3'
miRNA:   3'- -AUG-CCGAGaa--UCGCC--CGGCGUGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.