miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 3' -56.2 NC_004684.1 + 19460 0.72 0.379452
Target:  5'- ---cGGGC--GGCGGUGGCCcgcgcgacauGCGCCCc -3'
miRNA:   3'- aguuCCUGuuCCGCCACUGG----------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 66452 0.72 0.388169
Target:  5'- gUCAGGGugGcGGCGuUGucuCCACGCCg -3'
miRNA:   3'- -AGUUCCugUuCCGCcACu--GGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 53179 0.72 0.388169
Target:  5'- cCGGGGAC-AGGCc--GACCGCGCCg -3'
miRNA:   3'- aGUUCCUGuUCCGccaCUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 33460 0.72 0.388169
Target:  5'- gUCGAGGAU--GGCGGUcACUggaaugcgcGCGCCCa -3'
miRNA:   3'- -AGUUCCUGuuCCGCCAcUGG---------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 49904 0.72 0.397015
Target:  5'- ---cGGACA---UGGUGAUCGCGCCCa -3'
miRNA:   3'- aguuCCUGUuccGCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 26733 0.72 0.397015
Target:  5'- cCGAGcGCGAcuGGCGG-GGCCAgGCCCc -3'
miRNA:   3'- aGUUCcUGUU--CCGCCaCUGGUgCGGG- -5'
19210 3' -56.2 NC_004684.1 + 21183 0.72 0.40599
Target:  5'- uUCGAGGAacuGGGCGGcuauACgCACGCCUa -3'
miRNA:   3'- -AGUUCCUgu-UCCGCCac--UG-GUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 3047 0.71 0.415091
Target:  5'- aCGAGGcCcGGGUGGUGG-CGCGCCg -3'
miRNA:   3'- aGUUCCuGuUCCGCCACUgGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 16480 0.71 0.424317
Target:  5'- ---uGGGC-AGGCGGUGuuguuuacagcACCGCGCuCCa -3'
miRNA:   3'- aguuCCUGuUCCGCCAC-----------UGGUGCG-GG- -5'
19210 3' -56.2 NC_004684.1 + 63187 0.71 0.433664
Target:  5'- gUCGuGG-Cu-GGCGGUGAucagaaccaCCGCGCCCg -3'
miRNA:   3'- -AGUuCCuGuuCCGCCACU---------GGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 20921 0.7 0.462403
Target:  5'- gCAGcGGCAAGcgcGUGGUGGcCCugGCCCa -3'
miRNA:   3'- aGUUcCUGUUC---CGCCACU-GGugCGGG- -5'
19210 3' -56.2 NC_004684.1 + 10485 0.7 0.462403
Target:  5'- -gGAGGACAcgauGGCGGccuUGGCCuccuCGCCa -3'
miRNA:   3'- agUUCCUGUu---CCGCC---ACUGGu---GCGGg -5'
19210 3' -56.2 NC_004684.1 + 50769 0.7 0.462403
Target:  5'- aUCGacAGGAUGAGcGCGGUGAgCAUGCa- -3'
miRNA:   3'- -AGU--UCCUGUUC-CGCCACUgGUGCGgg -5'
19210 3' -56.2 NC_004684.1 + 34493 0.7 0.462403
Target:  5'- cCGAGGACAcccccgaaaauuGGGCGGUGuACCAggacaGCUa -3'
miRNA:   3'- aGUUCCUGU------------UCCGCCAC-UGGUg----CGGg -5'
19210 3' -56.2 NC_004684.1 + 34412 0.7 0.470235
Target:  5'- cUCAAGGGauugcguCGAGGCGGcgagguUGGCCagcgcgaGCGCCUg -3'
miRNA:   3'- -AGUUCCU-------GUUCCGCC------ACUGG-------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 14462 0.7 0.472204
Target:  5'- cCAAGGAgcuggggucgauCGAGGUGGUugccgGuACCACGCCg -3'
miRNA:   3'- aGUUCCU------------GUUCCGCCA-----C-UGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 33706 0.7 0.481114
Target:  5'- gCGAGGguguccaGCGcGGUGGUGgugcacagcgacGCCAUGCCCg -3'
miRNA:   3'- aGUUCC-------UGUuCCGCCAC------------UGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 24868 0.7 0.482108
Target:  5'- aCGccGACcacGGCGGUGAgCGCGCCg -3'
miRNA:   3'- aGUucCUGuu-CCGCCACUgGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 42439 0.7 0.482108
Target:  5'- --cAGGACu-GGCGGUcAUCGCGCCg -3'
miRNA:   3'- aguUCCUGuuCCGCCAcUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 12011 0.7 0.482108
Target:  5'- --cAGGACuucgcggcGGCGGUGGCCAagGCCa -3'
miRNA:   3'- aguUCCUGuu------CCGCCACUGGUg-CGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.