miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 3' -62.5 NC_004684.1 + 43973 1.08 0.000323
Target:  5'- cAUCAGCCGUGCGCGGGCGUACCCGGCc -3'
miRNA:   3'- -UAGUCGGCACGCGCCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 67065 0.76 0.083005
Target:  5'- uUCGcGCCGUacccgGUGCGGGCGUugGCCuCGGCg -3'
miRNA:   3'- uAGU-CGGCA-----CGCGCCCGCA--UGG-GCCG- -5'
19223 3' -62.5 NC_004684.1 + 43272 0.75 0.092458
Target:  5'- -aCGGCUGcUGCGUcGGCGUGCCgGGCu -3'
miRNA:   3'- uaGUCGGC-ACGCGcCCGCAUGGgCCG- -5'
19223 3' -62.5 NC_004684.1 + 33815 0.75 0.105712
Target:  5'- uUCGGCguCG-GCGgGcGGUGUGCCCGGCg -3'
miRNA:   3'- uAGUCG--GCaCGCgC-CCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 51013 0.74 0.114502
Target:  5'- -gUAGUCGaUGUGcCGGGUGUACUCGGCc -3'
miRNA:   3'- uaGUCGGC-ACGC-GCCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 28272 0.74 0.120736
Target:  5'- ---uGCCGaccccGCGCaGGCGUACCCGGUc -3'
miRNA:   3'- uaguCGGCa----CGCGcCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 37377 0.73 0.130681
Target:  5'- cUCAGCCaGgagcCGCuGGGUGUGCUCGGCa -3'
miRNA:   3'- uAGUCGG-Cac--GCG-CCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 9023 0.73 0.130681
Target:  5'- ---uGCCGUGCG-GGGCGgcaaCCGGCg -3'
miRNA:   3'- uaguCGGCACGCgCCCGCaug-GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 54029 0.73 0.130681
Target:  5'- cUCGGCCuucGUG-GCGGGUGUGCCCGcCg -3'
miRNA:   3'- uAGUCGG---CACgCGCCCGCAUGGGCcG- -5'
19223 3' -62.5 NC_004684.1 + 15888 0.73 0.141009
Target:  5'- -gCGGCCcUGUGCagccgcaGGGCGU-CCCGGCa -3'
miRNA:   3'- uaGUCGGcACGCG-------CCCGCAuGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 27351 0.73 0.141378
Target:  5'- --gAGCCGUGCGaGGGgGaucgGCCCGGUc -3'
miRNA:   3'- uagUCGGCACGCgCCCgCa---UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 64936 0.72 0.148949
Target:  5'- -gCGGCgGUGagcgccugGCGGGCGgugGCCCGGUu -3'
miRNA:   3'- uaGUCGgCACg-------CGCCCGCa--UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 62158 0.72 0.148949
Target:  5'- -cCGGCCuUGCGCaGGGCucgcgugACCCGGCc -3'
miRNA:   3'- uaGUCGGcACGCG-CCCGca-----UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 4031 0.72 0.165205
Target:  5'- cGUCGGCCGcucggUGCGCuGGGCGgucaCCGGg -3'
miRNA:   3'- -UAGUCGGC-----ACGCG-CCCGCaug-GGCCg -5'
19223 3' -62.5 NC_004684.1 + 19538 0.72 0.165631
Target:  5'- -cCAGCUgcggGUGCGcCGGGCGgugccaggucuccggGCCUGGCg -3'
miRNA:   3'- uaGUCGG----CACGC-GCCCGCa--------------UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 46115 0.72 0.173918
Target:  5'- -aCGGCCGgGCGCgcgugccgGGGUGguugACCUGGCg -3'
miRNA:   3'- uaGUCGGCaCGCG--------CCCGCa---UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 12214 0.72 0.173918
Target:  5'- -cCAGCgGUGCGUucuccGGGgGUGCuuCCGGCa -3'
miRNA:   3'- uaGUCGgCACGCG-----CCCgCAUG--GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 23555 0.71 0.187754
Target:  5'- -cCuGUCGUGCG-GGGacgaGUACCUGGCg -3'
miRNA:   3'- uaGuCGGCACGCgCCCg---CAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 14305 0.71 0.187754
Target:  5'- --aGGCCGccGCGCaGGUGUACgCCGGUa -3'
miRNA:   3'- uagUCGGCa-CGCGcCCGCAUG-GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 7639 0.71 0.197509
Target:  5'- cUC-GCCGUG-GCGGGCGUggugACCgGGUc -3'
miRNA:   3'- uAGuCGGCACgCGCCCGCA----UGGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.