miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 3' -62.5 NC_004684.1 + 61140 0.69 0.265662
Target:  5'- -cCGGCCcaGCGacuGGGUGUACUCGGUc -3'
miRNA:   3'- uaGUCGGcaCGCg--CCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 63496 0.7 0.223844
Target:  5'- -cCAGCUGcgccUGCGCcagcaGGGCG-GCCUGGCg -3'
miRNA:   3'- uaGUCGGC----ACGCG-----CCCGCaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 13974 0.7 0.229457
Target:  5'- -gCAGUCGcgcgGCGCaGGCcaGCCCGGCc -3'
miRNA:   3'- uaGUCGGCa---CGCGcCCGcaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 63229 0.7 0.235188
Target:  5'- -gCGGCuCGuUGC-CGGGCGUcgGCCCGaGCa -3'
miRNA:   3'- uaGUCG-GC-ACGcGCCCGCA--UGGGC-CG- -5'
19223 3' -62.5 NC_004684.1 + 26586 0.69 0.247011
Target:  5'- -gCGGCggUGUGCGCGGGUucGCCacCGGCg -3'
miRNA:   3'- uaGUCG--GCACGCGCCCGcaUGG--GCCG- -5'
19223 3' -62.5 NC_004684.1 + 40112 0.69 0.247011
Target:  5'- --uGGCCGUagcggGCGCuGGCGgcCUCGGCa -3'
miRNA:   3'- uagUCGGCA-----CGCGcCCGCauGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 65454 0.69 0.247011
Target:  5'- -gCGGCCaccGUGCGCcGGUaccagGCCCGGCa -3'
miRNA:   3'- uaGUCGG---CACGCGcCCGca---UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 63532 0.69 0.259321
Target:  5'- -gCAGCU---CGCGGGCGUggcGCUCGGCc -3'
miRNA:   3'- uaGUCGGcacGCGCCCGCA---UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 19603 0.69 0.259321
Target:  5'- -gCGGCCGagGUGCuGGCGgugacGCUCGGCg -3'
miRNA:   3'- uaGUCGGCa-CGCGcCCGCa----UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 62943 0.7 0.223289
Target:  5'- -cCAGCgCGcgGCGCGcgccgacgaugguGGCGUGCUCGGUg -3'
miRNA:   3'- uaGUCG-GCa-CGCGC-------------CCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 48911 0.7 0.218349
Target:  5'- uUCAGCaCGUGCGgGucCGcagGCCCGGCc -3'
miRNA:   3'- uAGUCG-GCACGCgCccGCa--UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 60273 0.71 0.20255
Target:  5'- cUCGGCgGUG-GCGGuuGCGUgGCCCGGUc -3'
miRNA:   3'- uAGUCGgCACgCGCC--CGCA-UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 67065 0.76 0.083005
Target:  5'- uUCGcGCCGUacccgGUGCGGGCGUugGCCuCGGCg -3'
miRNA:   3'- uAGU-CGGCA-----CGCGCCCGCA--UGG-GCCG- -5'
19223 3' -62.5 NC_004684.1 + 33815 0.75 0.105712
Target:  5'- uUCGGCguCG-GCGgGcGGUGUGCCCGGCg -3'
miRNA:   3'- uAGUCG--GCaCGCgC-CCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 37377 0.73 0.130681
Target:  5'- cUCAGCCaGgagcCGCuGGGUGUGCUCGGCa -3'
miRNA:   3'- uAGUCGG-Cac--GCG-CCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 54029 0.73 0.130681
Target:  5'- cUCGGCCuucGUG-GCGGGUGUGCCCGcCg -3'
miRNA:   3'- uAGUCGG---CACgCGCCCGCAUGGGCcG- -5'
19223 3' -62.5 NC_004684.1 + 15888 0.73 0.141009
Target:  5'- -gCGGCCcUGUGCagccgcaGGGCGU-CCCGGCa -3'
miRNA:   3'- uaGUCGGcACGCG-------CCCGCAuGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 64936 0.72 0.148949
Target:  5'- -gCGGCgGUGagcgccugGCGGGCGgugGCCCGGUu -3'
miRNA:   3'- uaGUCGgCACg-------CGCCCGCa--UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 62158 0.72 0.148949
Target:  5'- -cCGGCCuUGCGCaGGGCucgcgugACCCGGCc -3'
miRNA:   3'- uaGUCGGcACGCG-CCCGca-----UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 19538 0.72 0.165631
Target:  5'- -cCAGCUgcggGUGCGcCGGGCGgugccaggucuccggGCCUGGCg -3'
miRNA:   3'- uaGUCGG----CACGC-GCCCGCa--------------UGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.