miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 3' -62.5 NC_004684.1 + 395 0.7 0.218349
Target:  5'- gAUCAccGCCGUG-GCGGGCaaGCUgGGCg -3'
miRNA:   3'- -UAGU--CGGCACgCGCCCGcaUGGgCCG- -5'
19223 3' -62.5 NC_004684.1 + 1463 0.66 0.410243
Target:  5'- gGUCgAGaCCGgGC-CGGaCGUGCCCGGUg -3'
miRNA:   3'- -UAG-UC-GGCaCGcGCCcGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 1613 0.69 0.253104
Target:  5'- gGUC-GCCGUGCGCGcGCcca-CCGGCg -3'
miRNA:   3'- -UAGuCGGCACGCGCcCGcaugGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 4031 0.72 0.165205
Target:  5'- cGUCGGCCGcucggUGCGCuGGGCGgucaCCGGg -3'
miRNA:   3'- -UAGUCGGC-----ACGCG-CCCGCaug-GGCCg -5'
19223 3' -62.5 NC_004684.1 + 4209 0.66 0.388629
Target:  5'- uUCGGCCGcgucgagucgacccgGCGCGcaaccuGGUucggagucugagccgGUGCCCGGCg -3'
miRNA:   3'- uAGUCGGCa--------------CGCGC------CCG---------------CAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 5669 0.69 0.253104
Target:  5'- cUCAGCCGUGgucggagGUGGcCGggGCCCGGCc -3'
miRNA:   3'- uAGUCGGCACg------CGCCcGCa-UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 6070 0.67 0.367777
Target:  5'- ---cGCCGc-CGaGGGCGgcgGCCCGGCg -3'
miRNA:   3'- uaguCGGCacGCgCCCGCa--UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 6775 0.66 0.401508
Target:  5'- cAUgGGCgaCGUGCGcCGGGUGa--CCGGCc -3'
miRNA:   3'- -UAgUCG--GCACGC-GCCCGCaugGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 7217 0.69 0.241039
Target:  5'- --aGGCCGcgucugggaGCGCGuggaGGUGUGCCCGGUg -3'
miRNA:   3'- uagUCGGCa--------CGCGC----CCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 7495 0.7 0.229457
Target:  5'- -cCGGuUCGUGCGCcgccgcaucgGGGUGgaccUGCCCGGCa -3'
miRNA:   3'- uaGUC-GGCACGCG----------CCCGC----AUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 7583 0.67 0.367777
Target:  5'- -gCGGCUG-GUGCGcGGCa-ACCCGGUg -3'
miRNA:   3'- uaGUCGGCaCGCGC-CCGcaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 7639 0.71 0.197509
Target:  5'- cUC-GCCGUG-GCGGGCGUggugACCgGGUc -3'
miRNA:   3'- uAGuCGGCACgCGCCCGCA----UGGgCCG- -5'
19223 3' -62.5 NC_004684.1 + 7785 0.67 0.32843
Target:  5'- gGUCgAGCauugGUGCGCGGGaUGUgACCgGGUg -3'
miRNA:   3'- -UAG-UCGg---CACGCGCCC-GCA-UGGgCCG- -5'
19223 3' -62.5 NC_004684.1 + 8897 0.67 0.367777
Target:  5'- -gCAGUCG-GCGCggcaagaaGGGCGgGCgCGGCa -3'
miRNA:   3'- uaGUCGGCaCGCG--------CCCGCaUGgGCCG- -5'
19223 3' -62.5 NC_004684.1 + 9023 0.73 0.130681
Target:  5'- ---uGCCGUGCG-GGGCGgcaaCCGGCg -3'
miRNA:   3'- uaguCGGCACGCgCCCGCaug-GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 9267 0.7 0.212969
Target:  5'- gAUCAGCCG-GuCGCGuuguucGCGgACCCGGCc -3'
miRNA:   3'- -UAGUCGGCaC-GCGCc-----CGCaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 12214 0.72 0.173918
Target:  5'- -cCAGCgGUGCGUucuccGGGgGUGCuuCCGGCa -3'
miRNA:   3'- uaGUCGgCACGCG-----CCCgCAUG--GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 13086 0.66 0.409364
Target:  5'- uGUCAGCCGccaagggggccgaUGCGCgcacccccggccGGGUGgcgGCgCUGGCu -3'
miRNA:   3'- -UAGUCGGC-------------ACGCG------------CCCGCa--UG-GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 13974 0.7 0.229457
Target:  5'- -gCAGUCGcgcgGCGCaGGCcaGCCCGGCc -3'
miRNA:   3'- uaGUCGGCa---CGCGcCCGcaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 14305 0.71 0.187754
Target:  5'- --aGGCCGccGCGCaGGUGUACgCCGGUa -3'
miRNA:   3'- uagUCGGCa-CGCGcCCGCAUG-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.