Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 44008 | 1.09 | 0.0021 |
Target: 5'- uUGGCCAGGUCAUCCACGACCAUUUGAc -3' miRNA: 3'- -ACCGGUCCAGUAGGUGCUGGUAAACU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 3970 | 0.81 | 0.181339 |
Target: 5'- cGGCCAGGUCAUCCugG-CCGg---- -3' miRNA: 3'- aCCGGUCCAGUAGGugCuGGUaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 66929 | 0.79 | 0.213207 |
Target: 5'- cUGGCCcGGUUGUCCACGGCCAc---- -3' miRNA: 3'- -ACCGGuCCAGUAGGUGCUGGUaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 66778 | 0.79 | 0.230271 |
Target: 5'- cGGCCAGGUCGUCCaggucagGCGGCCcg--GAg -3' miRNA: 3'- aCCGGUCCAGUAGG-------UGCUGGuaaaCU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 58113 | 0.75 | 0.36355 |
Target: 5'- aUGGCCGGGUCcgCgaacaaCGCGACCGgcUGAu -3' miRNA: 3'- -ACCGGUCCAGuaG------GUGCUGGUaaACU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 67026 | 0.75 | 0.399388 |
Target: 5'- cGGCCAGGUCG-CgCAUGGCCAUcaGGg -3' miRNA: 3'- aCCGGUCCAGUaG-GUGCUGGUAaaCU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 46398 | 0.74 | 0.427706 |
Target: 5'- cUGGCCGggauGGUCggGUCCACGGCCAg---- -3' miRNA: 3'- -ACCGGU----CCAG--UAGGUGCUGGUaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 31685 | 0.74 | 0.447232 |
Target: 5'- aGGUCAGGUCA-CCGuCGAUCAUggUGAc -3' miRNA: 3'- aCCGGUCCAGUaGGU-GCUGGUAa-ACU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 58794 | 0.73 | 0.487705 |
Target: 5'- gGGCCAGGUUGUCC-CGGCgGUa--- -3' miRNA: 3'- aCCGGUCCAGUAGGuGCUGgUAaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 36187 | 0.71 | 0.573201 |
Target: 5'- cGGCCAGGUCGUCUuccaGGCCc----- -3' miRNA: 3'- aCCGGUCCAGUAGGug--CUGGuaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 25814 | 0.71 | 0.580887 |
Target: 5'- cUGGCCGGGUggcggccagaacggCAUCgGCGGCCAg---- -3' miRNA: 3'- -ACCGGUCCA--------------GUAGgUGCUGGUaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 13178 | 0.71 | 0.617357 |
Target: 5'- cUGGuCCAGGaCAgCCACGACCuggUGGc -3' miRNA: 3'- -ACC-GGUCCaGUaGGUGCUGGuaaACU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 21840 | 0.7 | 0.639551 |
Target: 5'- -aGCCGGG-CAUCCAUGGCCGc---- -3' miRNA: 3'- acCGGUCCaGUAGGUGCUGGUaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 61480 | 0.7 | 0.639551 |
Target: 5'- cGGCCAgccGGUCGUgCGCGAUCAg---- -3' miRNA: 3'- aCCGGU---CCAGUAgGUGCUGGUaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 8060 | 0.7 | 0.661717 |
Target: 5'- cGGCCGGGUCGUggCCGagUGGCCAa---- -3' miRNA: 3'- aCCGGUCCAGUA--GGU--GCUGGUaaacu -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 61091 | 0.7 | 0.661717 |
Target: 5'- cGGCCuGGUgGaCCugGACCAg--GAg -3' miRNA: 3'- aCCGGuCCAgUaGGugCUGGUaaaCU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 45836 | 0.7 | 0.683771 |
Target: 5'- cGGCCucggcGGUCAUgCCGCG-CUcgUUGAu -3' miRNA: 3'- aCCGGu----CCAGUA-GGUGCuGGuaAACU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 56239 | 0.69 | 0.694728 |
Target: 5'- cGGCCAGGUCcaccgacggCGCGACCAccuugUGGa -3' miRNA: 3'- aCCGGUCCAGuag------GUGCUGGUaa---ACU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 39064 | 0.69 | 0.694728 |
Target: 5'- gUGGCCAGcGUCAa-CACGAUCA--UGAa -3' miRNA: 3'- -ACCGGUC-CAGUagGUGCUGGUaaACU- -5' |
|||||||
19223 | 5' | -52.8 | NC_004684.1 | + | 41600 | 0.69 | 0.694728 |
Target: 5'- cUGGCgCAGGUCggCCACGAguCCGgcggccUGAa -3' miRNA: 3'- -ACCG-GUCCAGuaGGUGCU--GGUaa----ACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home