miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 5' -52.8 NC_004684.1 + 959 0.66 0.853803
Target:  5'- gGGCCugcGGGUCAUUgGCGACUc----- -3'
miRNA:   3'- aCCGG---UCCAGUAGgUGCUGGuaaacu -5'
19223 5' -52.8 NC_004684.1 + 3970 0.81 0.181339
Target:  5'- cGGCCAGGUCAUCCugG-CCGg---- -3'
miRNA:   3'- aCCGGUCCAGUAGGugCuGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 4726 0.66 0.862164
Target:  5'- cGGCCAGGaccUCG-CgCACGGCCAc---- -3'
miRNA:   3'- aCCGGUCC---AGUaG-GUGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 4897 0.66 0.878148
Target:  5'- cGGCCuGGUCG-CCAcCGGCCu----- -3'
miRNA:   3'- aCCGGuCCAGUaGGU-GCUGGuaaacu -5'
19223 5' -52.8 NC_004684.1 + 5873 0.66 0.878148
Target:  5'- aGGCCGGG-CAgcaCCAgccUGACCGggUGGc -3'
miRNA:   3'- aCCGGUCCaGUa--GGU---GCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 6291 0.67 0.836379
Target:  5'- cUGGCCAgcuccuGGUCcagGUCCACcaGGCCGUacUUGGc -3'
miRNA:   3'- -ACCGGU------CCAG---UAGGUG--CUGGUA--AACU- -5'
19223 5' -52.8 NC_004684.1 + 8060 0.7 0.661717
Target:  5'- cGGCCGGGUCGUggCCGagUGGCCAa---- -3'
miRNA:   3'- aCCGGUCCAGUA--GGU--GCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 8677 0.67 0.827336
Target:  5'- cGGCCAGGUg--CCuguGGCCGUgcgUGAg -3'
miRNA:   3'- aCCGGUCCAguaGGug-CUGGUAa--ACU- -5'
19223 5' -52.8 NC_004684.1 + 8996 0.67 0.827336
Target:  5'- cGGCCGGGcCAaggccUCCACGcgcgguGCCGUgcgGGg -3'
miRNA:   3'- aCCGGUCCaGU-----AGGUGC------UGGUAaa-CU- -5'
19223 5' -52.8 NC_004684.1 + 11928 0.68 0.779192
Target:  5'- -aGCCAGGgcCGUCCGCuGGCCAUg--- -3'
miRNA:   3'- acCGGUCCa-GUAGGUG-CUGGUAaacu -5'
19223 5' -52.8 NC_004684.1 + 13178 0.71 0.617357
Target:  5'- cUGGuCCAGGaCAgCCACGACCuggUGGc -3'
miRNA:   3'- -ACC-GGUCCaGUaGGUGCUGGuaaACU- -5'
19223 5' -52.8 NC_004684.1 + 13846 0.68 0.758772
Target:  5'- gUGGUUcuccgAGGUCAUCCGCGccgaccugGCCAUUcagGAg -3'
miRNA:   3'- -ACCGG-----UCCAGUAGGUGC--------UGGUAAa--CU- -5'
19223 5' -52.8 NC_004684.1 + 16204 0.68 0.758772
Target:  5'- cGGCCAGGgcgCgcgGUCCAUGGCCc----- -3'
miRNA:   3'- aCCGGUCCa--G---UAGGUGCUGGuaaacu -5'
19223 5' -52.8 NC_004684.1 + 16310 0.68 0.769054
Target:  5'- aUGGCCaAGGUCGagUCCAUcGCCAUc--- -3'
miRNA:   3'- -ACCGG-UCCAGU--AGGUGcUGGUAaacu -5'
19223 5' -52.8 NC_004684.1 + 16470 0.68 0.789175
Target:  5'- aGGCCGGGcugUCcggCCACGugCAgcUGGc -3'
miRNA:   3'- aCCGGUCC---AGua-GGUGCugGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 18846 0.66 0.862164
Target:  5'- aGGUCGGGUCGuggUCgGUGACCGggUGGc -3'
miRNA:   3'- aCCGGUCCAGU---AGgUGCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 20403 0.66 0.853803
Target:  5'- aGGCCgAGGUCAgCCugGACgAc---- -3'
miRNA:   3'- aCCGG-UCCAGUaGGugCUGgUaaacu -5'
19223 5' -52.8 NC_004684.1 + 20545 0.67 0.845204
Target:  5'- gGGCCAGGcauUCGUCCA--GCUAUagGAg -3'
miRNA:   3'- aCCGGUCC---AGUAGGUgcUGGUAaaCU- -5'
19223 5' -52.8 NC_004684.1 + 21840 0.7 0.639551
Target:  5'- -aGCCGGG-CAUCCAUGGCCGc---- -3'
miRNA:   3'- acCGGUCCaGUAGGUGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 24521 0.69 0.694728
Target:  5'- aGGCCGGG-CGUgCgGCGGCCuggUUGGc -3'
miRNA:   3'- aCCGGUCCaGUA-GgUGCUGGua-AACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.