miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 5' -52.8 NC_004684.1 + 20545 0.67 0.845204
Target:  5'- gGGCCAGGcauUCGUCCA--GCUAUagGAg -3'
miRNA:   3'- aCCGGUCC---AGUAGGUgcUGGUAaaCU- -5'
19223 5' -52.8 NC_004684.1 + 13846 0.68 0.758772
Target:  5'- gUGGUUcuccgAGGUCAUCCGCGccgaccugGCCAUUcagGAg -3'
miRNA:   3'- -ACCGG-----UCCAGUAGGUGC--------UGGUAAa--CU- -5'
19223 5' -52.8 NC_004684.1 + 63796 0.68 0.758772
Target:  5'- uUGGCCuucgUGUCCGCGACCGUggugcuggUGAu -3'
miRNA:   3'- -ACCGGuccaGUAGGUGCUGGUAa-------ACU- -5'
19223 5' -52.8 NC_004684.1 + 11928 0.68 0.779192
Target:  5'- -aGCCAGGgcCGUCCGCuGGCCAUg--- -3'
miRNA:   3'- acCGGUCCa-GUAGGUG-CUGGUAaacu -5'
19223 5' -52.8 NC_004684.1 + 50128 0.68 0.789175
Target:  5'- aUGGCCAGGUUgAUCgGCGggcacuccACCAgcgUGGa -3'
miRNA:   3'- -ACCGGUCCAG-UAGgUGC--------UGGUaa-ACU- -5'
19223 5' -52.8 NC_004684.1 + 47907 0.67 0.798992
Target:  5'- aGGCCAcGGUCGgcggCCuCGGCCAc---- -3'
miRNA:   3'- aCCGGU-CCAGUa---GGuGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 56823 0.67 0.798992
Target:  5'- gUGGCCA--UCGaCCACGACCAccUGGc -3'
miRNA:   3'- -ACCGGUccAGUaGGUGCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 28079 0.67 0.818083
Target:  5'- gUGGCCGGG-CcgCCGCGcgacccgcACCGggUGGu -3'
miRNA:   3'- -ACCGGUCCaGuaGGUGC--------UGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 6291 0.67 0.836379
Target:  5'- cUGGCCAgcuccuGGUCcagGUCCACcaGGCCGUacUUGGc -3'
miRNA:   3'- -ACCGGU------CCAG---UAGGUG--CUGGUA--AACU- -5'
19223 5' -52.8 NC_004684.1 + 53361 0.69 0.715368
Target:  5'- cUGGUCGGGUCGcCCugGAugcgguuCCAggUGAu -3'
miRNA:   3'- -ACCGGUCCAGUaGGugCU-------GGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 41600 0.69 0.694728
Target:  5'- cUGGCgCAGGUCggCCACGAguCCGgcggccUGAa -3'
miRNA:   3'- -ACCG-GUCCAGuaGGUGCU--GGUaa----ACU- -5'
19223 5' -52.8 NC_004684.1 + 39064 0.69 0.694728
Target:  5'- gUGGCCAGcGUCAa-CACGAUCA--UGAa -3'
miRNA:   3'- -ACCGGUC-CAGUagGUGCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 3970 0.81 0.181339
Target:  5'- cGGCCAGGUCAUCCugG-CCGg---- -3'
miRNA:   3'- aCCGGUCCAGUAGGugCuGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 58113 0.75 0.36355
Target:  5'- aUGGCCGGGUCcgCgaacaaCGCGACCGgcUGAu -3'
miRNA:   3'- -ACCGGUCCAGuaG------GUGCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 46398 0.74 0.427706
Target:  5'- cUGGCCGggauGGUCggGUCCACGGCCAg---- -3'
miRNA:   3'- -ACCGGU----CCAG--UAGGUGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 58794 0.73 0.487705
Target:  5'- gGGCCAGGUUGUCC-CGGCgGUa--- -3'
miRNA:   3'- aCCGGUCCAGUAGGuGCUGgUAaacu -5'
19223 5' -52.8 NC_004684.1 + 25814 0.71 0.580887
Target:  5'- cUGGCCGGGUggcggccagaacggCAUCgGCGGCCAg---- -3'
miRNA:   3'- -ACCGGUCCA--------------GUAGgUGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 13178 0.71 0.617357
Target:  5'- cUGGuCCAGGaCAgCCACGACCuggUGGc -3'
miRNA:   3'- -ACC-GGUCCaGUaGGUGCUGGuaaACU- -5'
19223 5' -52.8 NC_004684.1 + 21840 0.7 0.639551
Target:  5'- -aGCCGGG-CAUCCAUGGCCGc---- -3'
miRNA:   3'- acCGGUCCaGUAGGUGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 45836 0.7 0.683771
Target:  5'- cGGCCucggcGGUCAUgCCGCG-CUcgUUGAu -3'
miRNA:   3'- aCCGGu----CCAGUA-GGUGCuGGuaAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.