miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19224 5' -62.7 NC_004684.1 + 44519 1.08 0.000283
Target:  5'- cAGCGUCUUGGCCGCCGUGGUGGCCCGg -3'
miRNA:   3'- -UCGCAGAACCGGCGGCACCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 55551 0.76 0.088587
Target:  5'- cGCGcCgcUGGCCGCCGUggcccGGUGGCCgGg -3'
miRNA:   3'- uCGCaGa-ACCGGCGGCA-----CCACCGGgC- -5'
19224 5' -62.7 NC_004684.1 + 63898 0.74 0.109669
Target:  5'- cGGCGUCcUGGCgGCCacGGUgcGGCCCGg -3'
miRNA:   3'- -UCGCAGaACCGgCGGcaCCA--CCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 55727 0.74 0.118728
Target:  5'- cGGCgGUCacgUUGGCCGCCGUGcuggcGUGGCCg- -3'
miRNA:   3'- -UCG-CAG---AACCGGCGGCAC-----CACCGGgc -5'
19224 5' -62.7 NC_004684.1 + 64301 0.74 0.118728
Target:  5'- uGCGcCcUGGCCGUCGUGGUGGUugaacaCCGc -3'
miRNA:   3'- uCGCaGaACCGGCGGCACCACCG------GGC- -5'
19224 5' -62.7 NC_004684.1 + 42945 0.73 0.142632
Target:  5'- cGGCG-CUugUGGCUGCUGUGGUuguGGCCgGg -3'
miRNA:   3'- -UCGCaGA--ACCGGCGGCACCA---CCGGgC- -5'
19224 5' -62.7 NC_004684.1 + 26427 0.72 0.154169
Target:  5'- cAGCGg---GGuUCGCCGccGGUGGCCCGg -3'
miRNA:   3'- -UCGCagaaCC-GGCGGCa-CCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 25564 0.71 0.179804
Target:  5'- cGCGUCggUGGCCagcGCCuccgGGUGGUCCa -3'
miRNA:   3'- uCGCAGa-ACCGG---CGGca--CCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 45115 0.71 0.179804
Target:  5'- cGCGggcCUUGGCCGCCGccaGGcGGUCCc -3'
miRNA:   3'- uCGCa--GAACCGGCGGCa--CCaCCGGGc -5'
19224 5' -62.7 NC_004684.1 + 13270 0.71 0.184428
Target:  5'- cAGCGcgCUggUGGCCGCCGguggcUGGUGcGCgCCGu -3'
miRNA:   3'- -UCGCa-GA--ACCGGCGGC-----ACCAC-CG-GGC- -5'
19224 5' -62.7 NC_004684.1 + 58329 0.71 0.193992
Target:  5'- cGgGUCaUGGCgCGCCc-GGUGGCCCu -3'
miRNA:   3'- uCgCAGaACCG-GCGGcaCCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 67195 0.71 0.193992
Target:  5'- cAGCGUUgccagGGCCaCCuugGUGGUGGuCCCGa -3'
miRNA:   3'- -UCGCAGaa---CCGGcGG---CACCACC-GGGC- -5'
19224 5' -62.7 NC_004684.1 + 12057 0.7 0.230939
Target:  5'- aGGCGgCUcgccUGGCCGCCGagcgcgacgaggUGcUGGCCCGc -3'
miRNA:   3'- -UCGCaGA----ACCGGCGGC------------ACcACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 57866 0.69 0.273646
Target:  5'- cAGCGUCccGGCaCGCCaGaccggugcuggcUGGUGGCCgGg -3'
miRNA:   3'- -UCGCAGaaCCG-GCGG-C------------ACCACCGGgC- -5'
19224 5' -62.7 NC_004684.1 + 3631 0.69 0.273646
Target:  5'- uGCuGUCggccgcaaacuagUGGCCGCCcgGUgccgggucaucguacGGUGGCCCGg -3'
miRNA:   3'- uCG-CAGa------------ACCGGCGG--CA---------------CCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 15089 0.68 0.293805
Target:  5'- cGGCGcggUGGCCGCCcUGGaGGCCg- -3'
miRNA:   3'- -UCGCagaACCGGCGGcACCaCCGGgc -5'
19224 5' -62.7 NC_004684.1 + 6845 0.68 0.293805
Target:  5'- cGGCG-CgaagGGCgaCGCCGUGGUGGUgCu -3'
miRNA:   3'- -UCGCaGaa--CCG--GCGGCACCACCGgGc -5'
19224 5' -62.7 NC_004684.1 + 45211 0.68 0.307876
Target:  5'- aGGCGguc--GCCGCCGccGUGGCCCu -3'
miRNA:   3'- -UCGCagaacCGGCGGCacCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 25062 0.68 0.307876
Target:  5'- aGGUGgccagGGCgGCCGgguUGGUGGCCuCGa -3'
miRNA:   3'- -UCGCagaa-CCGgCGGC---ACCACCGG-GC- -5'
19224 5' -62.7 NC_004684.1 + 57123 0.68 0.307876
Target:  5'- cGGCGUCgcUGGCCaGU--UGGuUGGCCCGc -3'
miRNA:   3'- -UCGCAGa-ACCGG-CGgcACC-ACCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.