miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19224 5' -62.7 NC_004684.1 + 14825 0.66 0.394322
Target:  5'- uGUGg---GGCgCGCCGUGGUGcgucGCCCc -3'
miRNA:   3'- uCGCagaaCCG-GCGGCACCAC----CGGGc -5'
19224 5' -62.7 NC_004684.1 + 65760 0.67 0.329938
Target:  5'- gGGCGU--UGGCCGCCGcgcgccGGUGGgCgCGc -3'
miRNA:   3'- -UCGCAgaACCGGCGGCa-----CCACCgG-GC- -5'
19224 5' -62.7 NC_004684.1 + 61537 0.67 0.345283
Target:  5'- aGGCG-C-UGGCgUGCCGcUGGuUGGUCCGg -3'
miRNA:   3'- -UCGCaGaACCG-GCGGC-ACC-ACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 61340 0.67 0.345283
Target:  5'- cGGCGUaggUGGCgGCCaggugaaugGUGGUGGCguUCGa -3'
miRNA:   3'- -UCGCAga-ACCGgCGG---------CACCACCG--GGC- -5'
19224 5' -62.7 NC_004684.1 + 16566 0.67 0.359525
Target:  5'- gGGCGUCaucgugaacgcgUGGuaCCGCCGccagcgucugcUGGUGGCCUc -3'
miRNA:   3'- -UCGCAGa-----------ACC--GGCGGC-----------ACCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 25330 0.67 0.361133
Target:  5'- cGGCGUa-UGGCgGCCuccccGGUGGCCUu -3'
miRNA:   3'- -UCGCAgaACCGgCGGca---CCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 61693 0.67 0.361133
Target:  5'- uGGCGUC--GG-UGCCGUGGgcaggccgGGCCCc -3'
miRNA:   3'- -UCGCAGaaCCgGCGGCACCa-------CCGGGc -5'
19224 5' -62.7 NC_004684.1 + 64922 0.67 0.364363
Target:  5'- cGGCGaCccaggUGGCgGCgGUgagcgccuggcgggcGGUGGCCCGg -3'
miRNA:   3'- -UCGCaGa----ACCGgCGgCA---------------CCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 28221 0.66 0.389219
Target:  5'- uGCG-CUaccUGGCCGCCcacccggagcacagcGcGGUGGaCCCGg -3'
miRNA:   3'- uCGCaGA---ACCGGCGG---------------CaCCACC-GGGC- -5'
19224 5' -62.7 NC_004684.1 + 66599 0.68 0.310752
Target:  5'- cGCGcacgaccugguUCUUGGCCagcuuggugccugcgGCCuUGGUGGCCaCGa -3'
miRNA:   3'- uCGC-----------AGAACCGG---------------CGGcACCACCGG-GC- -5'
19224 5' -62.7 NC_004684.1 + 15089 0.68 0.293805
Target:  5'- cGGCGcggUGGCCGCCcUGGaGGCCg- -3'
miRNA:   3'- -UCGCagaACCGGCGGcACCaCCGGgc -5'
19224 5' -62.7 NC_004684.1 + 6845 0.68 0.293805
Target:  5'- cGGCG-CgaagGGCgaCGCCGUGGUGGUgCu -3'
miRNA:   3'- -UCGCaGaa--CCG--GCGGCACCACCGgGc -5'
19224 5' -62.7 NC_004684.1 + 55551 0.76 0.088587
Target:  5'- cGCGcCgcUGGCCGCCGUggcccGGUGGCCgGg -3'
miRNA:   3'- uCGCaGa-ACCGGCGGCA-----CCACCGGgC- -5'
19224 5' -62.7 NC_004684.1 + 64301 0.74 0.118728
Target:  5'- uGCGcCcUGGCCGUCGUGGUGGUugaacaCCGc -3'
miRNA:   3'- uCGCaGaACCGGCGGCACCACCG------GGC- -5'
19224 5' -62.7 NC_004684.1 + 42945 0.73 0.142632
Target:  5'- cGGCG-CUugUGGCUGCUGUGGUuguGGCCgGg -3'
miRNA:   3'- -UCGCaGA--ACCGGCGGCACCA---CCGGgC- -5'
19224 5' -62.7 NC_004684.1 + 26427 0.72 0.154169
Target:  5'- cAGCGg---GGuUCGCCGccGGUGGCCCGg -3'
miRNA:   3'- -UCGCagaaCC-GGCGGCa-CCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 13270 0.71 0.184428
Target:  5'- cAGCGcgCUggUGGCCGCCGguggcUGGUGcGCgCCGu -3'
miRNA:   3'- -UCGCa-GA--ACCGGCGGC-----ACCAC-CG-GGC- -5'
19224 5' -62.7 NC_004684.1 + 58329 0.71 0.193992
Target:  5'- cGgGUCaUGGCgCGCCc-GGUGGCCCu -3'
miRNA:   3'- uCgCAGaACCG-GCGGcaCCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 12057 0.7 0.230939
Target:  5'- aGGCGgCUcgccUGGCCGCCGagcgcgacgaggUGcUGGCCCGc -3'
miRNA:   3'- -UCGCaGA----ACCGGCGGC------------ACcACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 57866 0.69 0.273646
Target:  5'- cAGCGUCccGGCaCGCCaGaccggugcuggcUGGUGGCCgGg -3'
miRNA:   3'- -UCGCAGaaCCG-GCGG-C------------ACCACCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.